Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1393 ATGCCCTCAGCTCAGGATCCATTCTACGTTGTCAAGGCCGAGATTCAAGAATCTATTGACAAGTTGCAATCTGTATTTCGCCAATGGGAACGCGCTCCTGATGCTGTGGAGCGAGGACATCTTACAAAGGAGGTTCTTGCGGGATGTGGGAGCATAGAATGGCAGGTGGATGAATTGGACAAAGCAATTGCTGTTGCATCTAAAGAACCTTCTTGGTATGGCATTGGTGAAGTGGAGATTGAAAACCGGAGGAGATGGACAAGCAGTGCTCGTACTCAGGTTGGCGCAGTGAAGAAAACAGTGGAAGGTGGAAAGGGATCAAGTACAACAAGCCATCAAAGTGTTAGAGGGATGCACCAAGAATTAATGAGGCTACCGAATTCCCATCAAACTAATACATCCAACCATTATGCTGCCGAAGATGATGATTTCATACAATCAGAATCAGATAGGCAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGATGAGCTTAGTTCAAGTGTGCAAAGAATTGGAGGTGTTGGACTTACAATACATGATGAACTCATCGCACAGGAAAGGATTGTAGATGAACTTGGTAATGAGATGGACAGCACAACAAATCGTCTAGATTTCGTCCAAAAAAAAGTGGCAATGGTCATGAAGAAGGCTAGTGCAAAGGGCCAGCTCATGATGATATTGGGTTTGTTGGCCCTGTTTATTTTCCTCTTTATCTTGGTGTTCTTCACCTAG 738 0.4404 MPSAQDPFYVVKAEIQESIDKLQSVFRQWERAPDAVERGHLTKEVLAGCGSIEWQVDELDKAIAVASKEPSWYGIGEVEIENRRRWTSSARTQVGAVKKTVEGGKGSSTTSHQSVRGMHQELMRLPNSHQTNTSNHYAAEDDDFIQSESDRQMLLIKRQDEELDELSSSVQRIGGVGLTIHDELIAQERIVDELGNEMDSTTNRLDFVQKKVAMVMKKASAKGQLMMILGLLALFIFLFILVFFT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1393 245 MobiDBLite consensus disorder prediction 91 116 - -
Lja6g1393 245 Pfam SNARE domain 190 241 IPR000727 -
Lja6g1393 245 PANTHER SYNTAXIN 1 244 IPR045242 -
Lja6g1393 245 CDD SNARE_Qc 156 213 - -
Lja6g1393 245 SUPERFAMILY SNARE fusion complex 151 215 - -
Lja6g1393 245 Coils Coil 12 32 - -
Lja6g1393 245 Coils Coil 191 211 - -
Lja6g1393 245 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Lja6g1393 245 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Lja6g1393 245 SMART tSNARE_6 148 215 IPR000727 -
Lja6g1393 245 Gene3D - 2 103 - -
Lja6g1393 245 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 215 IPR000727 -
Lja6g1393 245 Gene3D - 160 224 - -
Lja6g1393 245 PANTHER SYNTAXIN PROTEIN 1 244 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1393 55 245 SNARE and Associated Proteins AT1G28490 69.792 5.77e-91 265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1393 6 39301512 39305381 Lja6g1393 6 39301512 39305381 PCT