Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1391 ATGTTTTCCTTCACTCCCACAAATGGGGTTTCATCAAAACCTCACCTTTCACACCACCCACTTCCCTTTCCCTTCCCTCTGCAATTCCACCACCCCCGGTTCCCCCACCGCTCCCCGATCCGCTGCGGCATCCGCGAGCTCCGGGAGCGAATCCAAACGGTGAAGAACACTCAGAAGATCACCGAAGCCATGAAGCTCGTCGCCGCCGCCAGGGTCCGGCGAGCTCAAGAAGCTGTCGTCAATGGAAGACCCTTCTCCGAGACCCTCGCTGAAATGTTGCACGACATCAACGACCGTGTCCGAGACGACGACGTCGAGGTTCCTCTTTGCAACGTCAGGCCAGTCAAGAAGGTTGCGCTTGTCGTCGTCACCGGAGACCGTGGACTCTGCGGCGGGTTCAACAATGCGGTGGTGAAGAAAGCTCAGACCAGAATCGAGGAGTTGAGGAAACTTGGGTTGGATTGCGTTGTGATCAGTGTTGGCAAAAAGGGTAACTCGTTTTTCAGTCGTAGGGATTTTGTAGAGGTTGATAGGTTTGTTGATAATGGGGGGTTTCCTACTACTAAAGACGCACAAACTATAGCTGATGATGTTTTTTCACTTTTTGTTAGTGAGGAAGTTGATAAGGTTGAGCTTGTGTTTACTAAATTTGTGTCTTTGGTTAAGTTTGATCCTGTGATTCAAACGTTGTTGCCTTTGTCAAGGAAAGGGGAGGTTTGTGATGTGAATGGGAATAGTGTTGATGCAATAGATGATGAGTATTTCAGGTTGACTTCTAAGGATGGGAAATTGGCTTTGGAGAGAGGTGTTGTGGGGATGGAGAAGAAAAGTGATGGGTGTGTTCCGATTATGGAATTTGAGCAAGACCCGGTTCAGATTCTTGATGCCATGATGCCTCTTTATTTGAACAGTCAGATTTTGAGGAGCTTGCAAGAATCACTGGCTAGTGAGCTTGCTGCTAGAATGGGTGCCATGTCTAATGCCACTGATAATGCAATTGAGTTGACGAAGAATCTTTCAGTTGCATACAATAGGGAGCGGCAGGCGAAAATAACTGGGGAGTTATTGGAGATTGTGGCAGGAGCTGAGGCACTAACACCAATTGATTGA 1110 0.4829 MFSFTPTNGVSSKPHLSHHPLPFPFPLQFHHPRFPHRSPIRCGIRELRERIQTVKNTQKITEAMKLVAAARVRRAQEAVVNGRPFSETLAEMLHDINDRVRDDDVEVPLCNVRPVKKVALVVVTGDRGLCGGFNNAVVKKAQTRIEELRKLGLDCVVISVGKKGNSFFSRRDFVEVDRFVDNGGFPTTKDAQTIADDVFSLFVSEEVDKVELVFTKFVSLVKFDPVIQTLLPLSRKGEVCDVNGNSVDAIDDEYFRLTSKDGKLALERGVVGMEKKSDGCVPIMEFEQDPVQILDAMMPLYLNSQILRSLQESLASELAARMGAMSNATDNAIELTKNLSVAYNRERQAKITGELLEIVAGAEALTPID* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1391 369 Hamap ATP synthase gamma chain [atpG]. 41 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g1391 369 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 44 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g1391 369 CDD F1-ATPase_gamma 44 362 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g1391 369 PRINTS ATP synthase gamma subunit signature 115 134 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g1391 369 PRINTS ATP synthase gamma subunit signature 208 225 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g1391 369 PRINTS ATP synthase gamma subunit signature 312 331 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g1391 369 PRINTS ATP synthase gamma subunit signature 343 364 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g1391 369 Gene3D - 109 234 - -
Lja6g1391 369 PANTHER ATP SYNTHASE GAMMA CHAIN 25 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lja6g1391 369 Gene3D ATP synthase, gamma subunit, helix hairpin domain 42 108 - -
Lja6g1391 369 Gene3D ATP synthase, gamma subunit, helix hairpin domain 272 365 - -
Lja6g1391 369 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 43 365 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lja6g1391 369 ProSitePatterns ATP synthase gamma subunit signature. 351 364 IPR023632 -
Lja6g1391 369 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 25 365 - -
Lja6g1391 369 Pfam ATP synthase 44 365 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1391 Lja-Chr6 39270012 39272272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1391 25 365 Primary Pumps ATPases AT1G15700 73.276 5.35e-180 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1391 K02115 - qsu:112000322 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1391 6 39270012 39272272 Lja6g2414 6 52993374 52995260 ECH
Lja6g1391 6 39270012 39272272 Lja6g1391 6 39270012 39272272 ECH