Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1389 ATGGAGCACTTAACATCCTTTAACGATGATGAAAGCGGGTTCATGGCAATGTTAGGTGGCTGCGGCGAAACGGGAAGTGGTGGCGGCAGCGGTGGCGGTGAAGGTAGTGGTGGTGGTGGTAAAGGGGAAGAGATGACTCTGAAGAAGGGTCCTTGGACCACAGCAGAGGATGCTGTTCTGATAGATTATGTGACAAAACATGGTGAAGGGAACTGGAACGCGGTCCAGAGGAACACAGGGCTGAATAGATGTGGGAAGAGTTGCAGGCTCAGATGGGCTAACCATTTGAGACCCAATTTGAAGAAAGGTGCTTTCTCCCCTGAAGAAGAGAAACTCATTGTTGACCTCCATGCACAGTTTGGTAACAAATGGGCAAGAATGGCTGCTTTGTTACCCGGGAGAACAGACAATGAAATCAAGAACTATTGGAACACAAGGATCAAGAGGCGGCAGAGACAAGGTCTTCCTCTGTATTCAGATGACCATGATCGACCCACAACACCAACCACACCCACCACCCCTTCCTCATGTGTCACCCCAACAGGATCATCACACCCCAACACCGCCACAAAGTTTGAATTCTTCCATCAGAACCACCACCAACACCACCACCACCACCACCACCAACAACAACAACAACAACAGCAACATCAGCAACAATATCACTTCAACCACCACCACCCTCTATCTCCAACCGCATCCCACCACCACCACCACCATTCTCCTCTATCTTCACCCCTCCAACACAGAGCACCCTCCTATTCCCCACACACTTTCTTAGACCCTGCACCTTCAGCATTACCCTTATCCTCCTCTGCACCTTCCCTTCACTCCTTCACCTTCCAGAGACCTGCACCAATGCTCTGCACGCCGCTTCGCTTCAAGCGTTACTGCGCCTCTCCCGGCAGCTACAACAGCTTCCAGGTCCCTAATTCGACCACACCTTGCTCCTCCTCCGCGCTCCATGATGTGACAACCAACCATCTTGATCATGGCTTCAGGTTCCCTGTTCATCAGCAAAACTCCTCTAATTTTTCTCAGTTTTTTCATACACCGTTGTTAGAGTCCGCGGCGGATCGAGGGGTTTCTTCTTCTTCCCCTTCAGCTTTTCAACACAAGCTGGAGCTCCCTTCAAACCAATTTTCAAGACCATCTGAGCAGGATCTTAAGCTTGATATTCATGAGTTCAACAATGATCCTTCTTTGCAGAGTAGTAGTGGGTTGCTTGGGGATATTCTATTGGATGCTCAGGCTCTGGCTTCTGGCCAGAATTCCAAGAAAAGAAGTAACTTGAGTTTGAATGAAGGAAATGATTTATTTGATGGATGCCAAAACCTTGAGGATTTCCCACTTAGCTCTGCTTACTGGTCTTCCACTTCAGGACAAAAACCAAAGGAAGAAGCACCAGACCTGAGCAAATTCACGAATGAGGATTTGTCATCACTTCTTACTGTGACACCTTCTTCCACTATGCAGCAGGGTCAAGATTGGCATAATAACAGTGCACCAGAAGCCTCCAATGTCCAATCTTCTGGCGGTGTCATGACAGATGACAATTTTGGACTTGAAATCAAGCCCATAGCTTCATTGTTTCCTCTCTCCAACACAACAAGCCATAATGAAAACCAAGGTTACACTTGGGACAATTTACCTGGTCTCTGCTAA 1665 0.4811 MEHLTSFNDDESGFMAMLGGCGETGSGGGSGGGEGSGGGGKGEEMTLKKGPWTTAEDAVLIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVDLHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDHDRPTTPTTPTTPSSCVTPTGSSHPNTATKFEFFHQNHHQHHHHHHHQQQQQQQQHQQQYHFNHHHPLSPTASHHHHHHSPLSSPLQHRAPSYSPHTFLDPAPSALPLSSSAPSLHSFTFQRPAPMLCTPLRFKRYCASPGSYNSFQVPNSTTPCSSSALHDVTTNHLDHGFRFPVHQQNSSNFSQFFHTPLLESAADRGVSSSSPSAFQHKLELPSNQFSRPSEQDLKLDIHEFNNDPSLQSSSGLLGDILLDAQALASGQNSKKRSNLSLNEGNDLFDGCQNLEDFPLSSAYWSSTSGQKPKEEAPDLSKFTNEDLSSLLTVTPSSTMQQGQDWHNNSAPEASNVQSSGGVMTDDNFGLEIKPIASLFPLSNTTSHNENQGYTWDNLPGLC* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1389 554 ProSiteProfiles Myb-like domain profile. 97 147 IPR001005 -
Lja6g1389 554 MobiDBLite consensus disorder prediction 212 227 - -
Lja6g1389 554 CDD SANT 51 96 IPR001005 -
Lja6g1389 554 SMART sant 48 98 IPR001005 -
Lja6g1389 554 SMART sant 101 149 IPR001005 -
Lja6g1389 554 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 36 520 - -
Lja6g1389 554 Gene3D - 48 101 - -
Lja6g1389 554 MobiDBLite consensus disorder prediction 163 194 - -
Lja6g1389 554 MobiDBLite consensus disorder prediction 153 259 - -
Lja6g1389 554 CDD SANT 104 145 IPR001005 -
Lja6g1389 554 MobiDBLite consensus disorder prediction 18 49 - -
Lja6g1389 554 MobiDBLite consensus disorder prediction 229 244 - -
Lja6g1389 554 Gene3D - 104 150 - -
Lja6g1389 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 151 IPR017930 -
Lja6g1389 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 96 IPR017930 -
Lja6g1389 554 ProSiteProfiles Myb-like domain profile. 44 96 IPR001005 -
Lja6g1389 554 Pfam Myb-like DNA-binding domain 102 145 IPR001005 -
Lja6g1389 554 Pfam Myb-like DNA-binding domain 49 96 IPR001005 -
Lja6g1389 554 MobiDBLite consensus disorder prediction 197 211 - -
Lja6g1389 554 SUPERFAMILY Homeodomain-like 46 143 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1389 Lja-Chr6 39255930 39259101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1389 28 183 MYB Transcription Factor Family AT4G26930 62.733 5.90e-66 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g1389 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1389 - - lja:Lj6g3v0869180.1 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1389 6 39255930 39259101 Lja6g1389 6 39255930 39259101 ECH