Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1370 ATGGCTGCTGAAACTGAAGAGTCTCGGTGTATCAGTCCTAACGATGCAACCTCTGGGTCTCAAACCTTGGCATTTGATGAAATTCCCATTGGAGTTGAACAAATGGATGAGAACTCAGACCTTAGTTTAACGGAGCAGGAGGTTGAACAACAAGAGGAAGTCTACAGAGAAGACGAGGAAGAGGAAGAGCCCAGTGAAGATGAACATCCCGTCCAAGAAGAAGAAGAGCCCATCGAAGAACAAGGAAATGAAGAGCCCATCGATGAAGAAGAAGAAGAAGAAGAAGAGCCCATCGAAGAACAAGAAGAAGAAGACAGTCCAGTGGAGACTCCACATGCTAGCAATGAGGTAATTGAAATTGCGATTAACGGTATGGAGGACATGGGTATGGTTAATTTCCACACATTAGAAGCGAAGGATGCTATTAATTATAATTTCCCAGATCGTGAAACTGCATTCTTGTTCTACAGCTGGTATGGTAGATTACATGAATTTGCTTGCCGTAAGTGTAGGTTGGTCAGAAACAAGGCTGGAGAAGTTGTCCAACAAACATTTGTATGCTACCGCGAAGGGAAGAAGAAAGATTCATTTGGGTGTGAAAAAAAGCGGAAGCGCGAACCCAAAAACGACACAAGGTGTGGATGTCGTGCTCACTTTATGGTACACATTGATTGGGGGAACAATCGCTGGTATGTCAAGTCCATTTTGGATGCACACAATCATGTGATGGTAGAGGATACTTTGATTGGGTTGGTTTATACATATAGGAAGATGAATGAAGCTGACATTATGCACATGAACGACCTGAGAAAAAGTGGTGTAAGCACTTCACTTGCATATGGTATATTTGCCAATCAAATGGGCGGTTACTGCAATGTTGATTTTAACAAGCATGACATGCAGAATCAAATTGACAAGCAGAGACGAGCTCAAGTTATTGATGCAAAAGGTGTTTTGGCCTTCTTTCGAGGTTTGAAAGAAACTAATGAAGACATGTATTGGAAGCATACAAGTGGTGAGGATGGTAGGTTAGACAAATTGTTCTGGTGTGATGGTTGCAGCCAGAGGAATTATTTAGTTTTTGGTGATGTATTGGCGTTTGATGCAACCTACAAGAAGAATAAATACAAACGTCCATTGGTTGTTTTCTCGGGTGTTAATCATCACAACCAAACTATTGTTTTTGCTGCTGCTCTGGTGTCTAATGAGAAAGTGGAAACCTATATTTGGTTGCTAGAACAATTTTTAGATGTTATGAAGGGCAAAGCTCCAATATCAGTCATGACTGATGGTGATTTAGCAATGAAGAATGCGATAAGAAAAGTATTTCCGAGGGCACACCACAGGCTTTGTGCGTGGCACCTATTGCGGAATGCCACTAGCAATGTTTCCAACCCAAATTTCACTTCAATGTTGAGAACGTGCATGATAGGGGACCTAGAAATCGGAGATTTTGAGGCAAAGTGGGCAAAAATGGTTGAAGAATGTGGCGTTGAAGATAACGACTGGGTCAGAGACTTGTATGAGATGAGAAATATGTGGGCTACTGCGCATATGCGTGGAGAATTCTTCGGAGGCTATAGGACCACCTCCCGAGTGGAGGGGTTACATGCCCAAATTGGCAAGTTCATTAATGTTTGGAACAACCTCACAGATTTCATGCACAACTTTTTCCGCTTTTTGAGTTATCAAAGATTTAGGGAGCTTGAAGCTGATTTGGCCTCCCTTCATGGTGATCAAGTATTATTGACCCAACTACGCTCCCTTGAAAGGTCAGCTTCCAATATTTATACTAAAAGTATGTTCAAAAATTTTCGCCGTGGCCTTCAACGTTCATTGATGTTGAGGGTTAATGTCTACAAGGAGACATCAACTTGCATCATCTACTTTGTGTCAAAGTATCGTTGGTATGGTAAGAAATGGCATGTTTCTCTATGGACGTCAAATATGGATTTGAACTGCTCTTGTATGAGGATGGAATCATTTGGTATTCCATGTGATCACATTCTTGCAGTGATTGTTTTTCTTGACATGGACGAAGTCCCAAAGTATGTAGTGCTGGAAAGGTGGACAAAAATTGCCAAAGAATCTTTAGATGGGTTCAAAAGGGGAGATGGAAGTCCATGGGATCCTATGATGGATTGTAGATTGGCTGCATTGAGAGAAAGTTGTAGACGCATGTGCAAGGTGGCGTGTGTCACTCCTGAGTTCTTCACAGAGACACATACGCTTGTGATTAGTCAAGCAGAAAAACTTGAAAAGGCTGGAAAACTGAACAAGGATTGCCCTACCGAGAATGGTGGGGAAAGATATTTACGTAACCCAACTTTGCCTGCAGCAAATGAAAACAGGGCAAGAAGATCCCAAGGAAGAGGAACACCAAAGCGTACTACTCACTGTGGTATTTGCGGTGGAGCAGGCCATAATAGAAAAACTTGTGTGGTTGTTACACAAGGTAGTCAAGTTGTTGAGACCTTGGAAGAAAGTACTGAAGAGGCTGCTGCAGTGACTTTGGGAGATGAAGTCTGA 2529 0.4219 MAAETEESRCISPNDATSGSQTLAFDEIPIGVEQMDENSDLSLTEQEVEQQEEVYREDEEEEEPSEDEHPVQEEEEPIEEQGNEEPIDEEEEEEEEPIEEQEEEDSPVETPHASNEVIEIAINGMEDMGMVNFHTLEAKDAINYNFPDRETAFLFYSWYGRLHEFACRKCRLVRNKAGEVVQQTFVCYREGKKKDSFGCEKKRKREPKNDTRCGCRAHFMVHIDWGNNRWYVKSILDAHNHVMVEDTLIGLVYTYRKMNEADIMHMNDLRKSGVSTSLAYGIFANQMGGYCNVDFNKHDMQNQIDKQRRAQVIDAKGVLAFFRGLKETNEDMYWKHTSGEDGRLDKLFWCDGCSQRNYLVFGDVLAFDATYKKNKYKRPLVVFSGVNHHNQTIVFAAALVSNEKVETYIWLLEQFLDVMKGKAPISVMTDGDLAMKNAIRKVFPRAHHRLCAWHLLRNATSNVSNPNFTSMLRTCMIGDLEIGDFEAKWAKMVEECGVEDNDWVRDLYEMRNMWATAHMRGEFFGGYRTTSRVEGLHAQIGKFINVWNNLTDFMHNFFRFLSYQRFRELEADLASLHGDQVLLTQLRSLERSASNIYTKSMFKNFRRGLQRSLMLRVNVYKETSTCIIYFVSKYRWYGKKWHVSLWTSNMDLNCSCMRMESFGIPCDHILAVIVFLDMDEVPKYVVLERWTKIAKESLDGFKRGDGSPWDPMMDCRLAALRESCRRMCKVACVTPEFFTETHTLVISQAEKLEKAGKLNKDCPTENGGERYLRNPTLPAANENRARRSQGRGTPKRTTHCGICGGAGHNRKTCVVVTQGSQVVETLEESTEEAAAVTLGDEV* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1370 842 PANTHER OS02G0262500 PROTEIN 125 741 - -
Lja6g1370 842 Coils Coil 41 61 - -
Lja6g1370 842 ProSiteProfiles Zinc finger SWIM-type profile. 641 677 IPR007527 GO:0008270
Lja6g1370 842 SMART 26again6 652 679 IPR006564 GO:0008270
Lja6g1370 842 MobiDBLite consensus disorder prediction 40 106 - -
Lja6g1370 842 MobiDBLite consensus disorder prediction 1 113 - -
Lja6g1370 842 Pfam FAR1 DNA-binding domain 155 244 IPR004330 -
Lja6g1370 842 Pfam MULE transposase domain 364 458 IPR018289 -
Lja6g1370 842 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 125 741 IPR031052 GO:0006355
Lja6g1370 842 MobiDBLite consensus disorder prediction 10 24 - -
Lja6g1370 842 Pfam SWIM zinc finger 642 673 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1370 Lja-Chr6 38923289 38926479 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g1370 MULE 1.4e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1370 - - ahf:112758016 630.557