Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1360 ATGGATCAAGTCACCTCCAATGTTGATGATGCAGTTGCACATTCTTCTCAAGTCATGTCGTTTAATGGTAAACGACTAATCATGGATGAGATGGATTTCTTTGCAGAAAAGAAGTCAAGTCCAGTTATTAGTGATCAAATGGTGCACCAAATGGAGCTTCATGTTGATACTAGTTTAGATCTCCTCACAAAGATTTCCCCAAGCAACAGACTAACTGTGGAAGATGAGGCATTGGAGGCCAAGGATGATAAGAGAAATGAGTATGAAGCATTGCTAGCTGAATTGCACCACTTGAATGCTGAAAATCAACGCTTGAGAGAGCTGGTTGATCAGGTCAACAATGACTACAGTGCCCTATACAAGCATATTATGAAGCTGATGCAGAAACAGCAGACAAATGATGAGGGTAAGAGAGATGGTGTGATTCCAAGGCCATTTTTGGACATTGTTGGTTTTGCTGAAAAGGAACATGAGCCTTCTCAGAAGATTGCTGGCACAAGTGGAGATATTGTTCAGTTGGACACAAATGAAATCAAGAAATTGAGTTCTGCAAGGGATGTTGATCAAACATCCGAAACCGTGTCAATGATCAAGAAAGCTCGCGTATCTGTTCGAGCAAGATCAGAATCATCAATGATTCCAGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCTTGTCCTCGAGCTTATTATCGTTGCACAATCGGGACTGCTTGTCCAGTTCGTAAACAAGTACAAAGGTGTGCTGAAGATCGAAGTGTGTTAGTCACAACATATGAAGGGCAACATAACCATCAACTCCCTCCCACTGCCAAGGCAATGGCATCAACCACATCTGCAGCTGCATCAATGCTTCTTTCAGGAGCAATGCCAAGTGCAGATGGCATAATAAACCCAACCATACTAGAAAGTGCATCACTTTCTTGCTCACAAAACGTGGCAACCCTCTCTGCTTCAGCTCCATTTCCTACTATCACATTGGATCTCACTCAAAGTTCTACCAGCTCCTCACAGCTACAAGGGTCACTACAGAGCCAACTCAATCTCCTTCCCCCACTTTTGGCTCAGAAGTTTATGTCAGCTCCAAACACTTTTGGACATAAACTTCATCATTTGCAGGGAATAGAGACATCTTCATCATTGGCAGACACGGTTAATGCAGCTGCTGTTGCTATCACTGCAGACCCAAAATTCACAGCAACTCTTGTGGCTGCCATAACATCCATCATTGGCAATTCGCATTCAAATAATTGTGGTACAAGTAGGGATCCAGCCGTGCAATAA 1302 0.4309 MDQVTSNVDDAVAHSSQVMSFNGKRLIMDEMDFFAEKKSSPVISDQMVHQMELHVDTSLDLLTKISPSNRLTVEDEALEAKDDKRNEYEALLAELHHLNAENQRLRELVDQVNNDYSALYKHIMKLMQKQQTNDEGKRDGVIPRPFLDIVGFAEKEHEPSQKIAGTSGDIVQLDTNEIKKLSSARDVDQTSETVSMIKKARVSVRARSESSMIPDGCQWRKYGQKMAKGNPCPRAYYRCTIGTACPVRKQVQRCAEDRSVLVTTYEGQHNHQLPPTAKAMASTTSAAASMLLSGAMPSADGIINPTILESASLSCSQNVATLSASAPFPTITLDLTQSSTSSSQLQGSLQSQLNLLPPLLAQKFMSAPNTFGHKLHHLQGIETSSSLADTVNAAAVAITADPKFTATLVAAITSIIGNSHSNNCGTSRDPAVQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1360 433 Pfam WRKY DNA -binding domain 215 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1360 433 ProSiteProfiles WRKY domain profile. 208 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1360 433 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 13 162 - -
Lja6g1360 433 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 174 424 - -
Lja6g1360 433 SMART WRKY_cls 213 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g1360 433 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 174 424 IPR044810 GO:0003700
Lja6g1360 433 Gene3D WRKY domain 198 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1360 433 Coils Coil 74 115 - -
Lja6g1360 433 SUPERFAMILY WRKY DNA-binding domain 206 274 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g1360 433 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 13 162 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1360 Lja-Chr6 38769146 38772415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1360 25 429 WRKY Transcription Factor Family AT1G62300 42.105 6.38e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja6g1360 WRKY 4.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1360 - - lja:Lj0g3v0013729.1 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1360 6 38769146 38772415 Lja6g1136 6 33048528 33057691 PCT