Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1359 ATGGAGGACGCTGAATTGGGTACCTCAAAATCCTCCTCCCAGTTCCGAATGCCTTTCCCTCCTTACCGTCGATCACACTTACGCAGCCAAACTGTGCACACCCTCCATCACATTCTCTCCCACCTTTCTGCTGCTTCCACCGCCCCTACTAGCTCCCTCAATACTCCTGAGAATGGCGACGGTAGAATGGGGCAAGAAAACGAGGAAAGGGAGCGTGAGTGCGCTGAATTTGTTGCTTCTGATTTAACGGATCCCAAGGCTTCTGTATCCCAGAAGGAAATATTGGAGGTTCATGAGAACATTGAAGGGAATGGAGATAGGGGAAAGGATTTTAGTGCTAATGAGATGGTCCTAGATGATATAGAACTTCTGTTGGGAATGGAGGAAACTTCCACACAAGCAAATGATTTTAATGACGAACAGAAGGTAATGGCTGAGTTGGAGATGGTTGTGAATGGCATTGATGATCTTGTTCAGGATATTGGTTTAATCCCCTTGAACTCGGGGTTAGGTGAGAAACAGAATGATAGCAATGAAGTTGAGCTGATGGATTACCAAGTAGAGCATGTTGAATTTCTACATCCTGATGTGGACACATCTGGAAATGCAAGTAAGTTGCAAGTATCAGGTGATAATAATCAACTTACCTCAGAAGGCTTTCATCCACCTTTGATTTTTCATGCACCTGCATCAACAGTTGTACAAGCCTCGCCAATTAGTACATCACGTTTCAATAATGGAAGTCAACAACAGGAAACAGAATTGGTGGAATCAGTTTGTGCTGTAGTGAACTCTCTCCCCAGTACTGAAGAGGGTGGTCAGTTTGAGAAGGAAGAACATGATGGTCTAGAGGTTGCTGAAGCAACACACATTTCTTTAGATCTAGATATGAACAACGAAGAACTGAATATCAGTGAAGATGGTGGATTAATGGATTCTACTATTTTGGAGGGTAAACACGAAGTGCAGAATGAAGGAGAGAAATTAGATGTATTAACTAGTGTGAACAATGTGACAAACTCTTCCAATGTTCTTATTGAAAAGGGAAATGTAGAACAGGGAGAAATTTATGGGGAACAAGAAATGCAGAATGAAGGAGAGACATTAGAAAGATTAATGAGTATGAAAAATGCCACAAGTCCTTCCAATATTCTGATTGAAAATGGAGATATGGAAGAGGGAGAAATTTCAGGAGACTTTGAAATGGATGGCAATTCATTTGATATTTCTTCTGCTGACATGCCGACTGATTTAACTCAAAATAAAGTCTTTCTCAAAGGTTTCTTGGAAGAAAGTCAAGAAACCACTGCCAAAGAACATGGGAACTCATCTGCAGTGAAGATAGTCGGTGCTAGTAGAAAGAGAGAAGGTAGTTCTGATTCTGAAGAGAAGAAAGATAAAAAGAAGATGCCTGGTCCCGATAGTAAGGAGAAGTGTGGCCCTGGTGCTGATGAGGAGAAGAAAGATAAAGAGAAGCAGCTGAGTGATGCTAGTACGAATAAAAAACGCGGTCCTAGTTCCAAGGAGAAGAAAGTTAGAAAAAAGAGAAAGAGGCAAGCAAAAAAGAACAGAGAACTAGGTGTGAAAAGGTTGAAGTTGCTTCCAGTACAGAAAGAGAAAGCTATCTCATATTGCCGCCATTATCTCAACGGAAGGTGCAATGAGGGCGACAAATGCCATTTTTCACATGATACGGTCCCGAAGACAAAATCCAAGGCATGTCATCACTTTGCTCGTCACTCTTGCATGAAAGGAGATGATTGCCCATATGATCATGAGCTCTCCAAGTATCCTTGTAACAATTTTGTTTCCAGCGGCTCTTGTTCGAGAGGTGATACTTGTATGTTTTCACACCAGGTACCTACCAACCAAGATATACCTACACCTTCAAATGTTTGCAAACCACAGCCGGCATCTCTGCTTAACAATCACGGGTTTAAGTCTATCCAGCAAAACCACTTGAAAAGAATCAATTCTCTCATCAATCCAGTCCATCATATGGTGGCAGATACGTCACAGAAACAGCCTACCCCAGCACCAAAAGGAATTAGGTTCATCAATGCTGCAAAATTATCACCCAGCCCTAGCACACTGAAACAAGGCATGTTGACACCAAACACGGAAAGTCTTGTTCAACATGGGACCCTTGCAGATCGAAGTGCATCTGGCACTAGCACTACTCAAAGCATAGTGGAAATTTCTAAGAAATTGCCTGCTGTGGCACCTAAGGGAATTAATTTTCTTTCATTTGGCAAAGGTCCTGTCTGCAGTTTTAAAAGTTCCATGAGCTTCCATGTAAATCGTGAAAATGGTATCAAGTTGCCTCAGGTTTTCAATTTTGGTTTGCCCTACCAAGCAAGTCCGTCTATAGATAAGGATGGCTCTGGCAAAGTTAGTGATGGAACCAAAAATGTACCACAAACTGATCTGTCCTCAAATGAGATTTTAAACAAAGTTCTATCTGTGGCAGAAGAAATGAAATCCAAGTTTCCAGGGAAAGCTTCAAAAGATGATTCTGCAAAGGATAACAGCCGTAGTAAATCAGTTCAAGAGGGAAAGAAGGTATCTAATAATTCTTCAGAATGCCTTGTATCCGGGTATCATAAACTTGCATCAAGGTCAAGTAAAAAGGCACTGTCATCAACTTTAGCTTTTGCAGCGGAGCATGAATCAGATATTAAAATGAAATTAATAGTTGGTGGTTCATCTGTATGA 2715 0.4136 MEDAELGTSKSSSQFRMPFPPYRRSHLRSQTVHTLHHILSHLSAASTAPTSSLNTPENGDGRMGQENEERERECAEFVASDLTDPKASVSQKEILEVHENIEGNGDRGKDFSANEMVLDDIELLLGMEETSTQANDFNDEQKVMAELEMVVNGIDDLVQDIGLIPLNSGLGEKQNDSNEVELMDYQVEHVEFLHPDVDTSGNASKLQVSGDNNQLTSEGFHPPLIFHAPASTVVQASPISTSRFNNGSQQQETELVESVCAVVNSLPSTEEGGQFEKEEHDGLEVAEATHISLDLDMNNEELNISEDGGLMDSTILEGKHEVQNEGEKLDVLTSVNNVTNSSNVLIEKGNVEQGEIYGEQEMQNEGETLERLMSMKNATSPSNILIENGDMEEGEISGDFEMDGNSFDISSADMPTDLTQNKVFLKGFLEESQETTAKEHGNSSAVKIVGASRKREGSSDSEEKKDKKKMPGPDSKEKCGPGADEEKKDKEKQLSDASTNKKRGPSSKEKKVRKKRKRQAKKNRELGVKRLKLLPVQKEKAISYCRHYLNGRCNEGDKCHFSHDTVPKTKSKACHHFARHSCMKGDDCPYDHELSKYPCNNFVSSGSCSRGDTCMFSHQVPTNQDIPTPSNVCKPQPASLLNNHGFKSIQQNHLKRINSLINPVHHMVADTSQKQPTPAPKGIRFINAAKLSPSPSTLKQGMLTPNTESLVQHGTLADRSASGTSTTQSIVEISKKLPAVAPKGINFLSFGKGPVCSFKSSMSFHVNRENGIKLPQVFNFGLPYQASPSIDKDGSGKVSDGTKNVPQTDLSSNEILNKVLSVAEEMKSKFPGKASKDDSAKDNSRSKSVQEGKKVSNNSSECLVSGYHKLASRSSKKALSSTLAFAAEHESDIKMKLIVGGSSV* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1359 904 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 374 891 IPR045124 GO:0003723|GO:0045892
Lja6g1359 904 PANTHER PROTEIN SUPPRESSOR OF SABLE 374 891 - -
Lja6g1359 904 MobiDBLite consensus disorder prediction 43 61 - -
Lja6g1359 904 MobiDBLite consensus disorder prediction 453 505 - -
Lja6g1359 904 ProSiteProfiles Zinc finger C3H1-type profile. 539 566 IPR000571 GO:0046872
Lja6g1359 904 SUPERFAMILY CCCH zinc finger 597 624 IPR036855 GO:0046872
Lja6g1359 904 ProSiteProfiles Zinc finger C3H1-type profile. 598 621 IPR000571 GO:0046872
Lja6g1359 904 MobiDBLite consensus disorder prediction 506 525 - -
Lja6g1359 904 MobiDBLite consensus disorder prediction 43 67 - -
Lja6g1359 904 Gene3D - 497 568 - -
Lja6g1359 904 MobiDBLite consensus disorder prediction 829 849 - -
Lja6g1359 904 Gene3D - 569 639 - -
Lja6g1359 904 ProSiteProfiles Zinc finger C3H1-type profile. 568 595 IPR000571 GO:0046872
Lja6g1359 904 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g1359 904 MobiDBLite consensus disorder prediction 789 810 - -
Lja6g1359 904 MobiDBLite consensus disorder prediction 829 855 - -
Lja6g1359 904 SUPERFAMILY CCCH zinc finger 540 564 IPR036855 GO:0046872
Lja6g1359 904 MobiDBLite consensus disorder prediction 434 528 - -
Lja6g1359 904 SMART c3hfinal6 541 565 IPR000571 GO:0046872
Lja6g1359 904 SMART c3hfinal6 596 620 IPR000571 GO:0046872
Lja6g1359 904 SMART c3hfinal6 568 594 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1359 Lja-Chr6 38752723 38759421 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja6g1359 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1359 - - lja:Lj0g3v0252879.1 1234.55