Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1355 ATGGGTAAGGGTGGAGCCGCCGCCGGCGCCGGCGCGGTCGAGCTCGACGGACCCGGTCCGCGGCCGGTTTTTTTCCAAGAGCCGAGATACCGGGGCGTCAGAAAGAGACCATGGGGCCGGTTCGCCGCCGAGATCAGAGACCCTATGAAGAAAGCCAGGGTGTGGCTCGGAACGTTCGACACCGCAGAGGACGCGGCGCGTGCGTATGACACCGCCGCCAGAAACCTCCGGGGACCGAAAGCCAAGACGAATTTTCCCCTCTCGACACCGTTTTACCACCAGCACGACAACGCCGCCGCCGATCCGTTCGCCGATCACCGGTTCTACCCTGCCGCCGGTGCTGGTGCCGGTGCCGGCAACGTGTTTCACGATCATCAGAGGCCTACCTCCAGTGGCATGAGCAGCACCGTCGAGTCCTTCAGCGGTCCCCGCCCTGTCAGACCTCCGGCTCCGCCGGTTGCAGCCGCCCGGAGGTACCCTCGGTCCCCGCCCGTTGTTCCTGAAGACTGCCGCAGCGACTGCGATTCCTCGTCATCGGTGGTTGACGACGGCGATGGAGACAACGTCGCTTCTTCATCCTTGCTGCCGATTCGCCGCCAGCCGCTGCCGTTTGATCTCAACGCGCCGCCGGCGGAGGATGCTGGTGATGATCTGCACTGCACCGCTCTCTGTCTCTGA 678 0.6504 MGKGGAAAGAGAVELDGPGPRPVFFQEPRYRGVRKRPWGRFAAEIRDPMKKARVWLGTFDTAEDAARAYDTAARNLRGPKAKTNFPLSTPFYHQHDNAAADPFADHRFYPAAGAGAGAGNVFHDHQRPTSSGMSSTVESFSGPRPVRPPAPPVAAARRYPRSPPVVPEDCRSDCDSSSSVVDDGDGDNVASSSLLPIRRQPLPFDLNAPPAEDAGDDLHCTALCL* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1355 225 MobiDBLite consensus disorder prediction 126 141 - -
Lja6g1355 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 200 - -
Lja6g1355 225 MobiDBLite consensus disorder prediction 172 186 - -
Lja6g1355 225 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Lja6g1355 225 MobiDBLite consensus disorder prediction 144 158 - -
Lja6g1355 225 MobiDBLite consensus disorder prediction 1 23 - -
Lja6g1355 225 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Lja6g1355 225 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Lja6g1355 225 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lja6g1355 225 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lja6g1355 225 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lja6g1355 225 PANTHER ETHYLENE RESPONSE FACTOR 1 200 - -
Lja6g1355 225 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Lja6g1355 225 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lja6g1355 225 MobiDBLite consensus disorder prediction 126 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1355 Lja-Chr6 38673974 38675680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1355 26 225 AP2-EREBP Transcription Factor Family AT3G20310 53.509 1.15e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja6g1355 AP2 5.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1355 K09286 - gmx:100782025 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1355 6 38673974 38675680 Lja6g1355 6 38673974 38675680 ECH
Lja6g1355 6 38673974 38675680 Lja6g1355 6 38673974 38675680 PCT