Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1338 ATGGCATCTTCTTCAGACACATGGATGAAGGAATATAATGAAGCAATGAAACTTGCCGATGATATCAACAGCATGATTTCTGAGCGGAGTTCATTTCCTGCATCTGGACCAGAAACCCAGCGTCACGCATCTGCTATAAGAAGGAAAATCACAATATTGGGGACCAGACTTGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGTCGCAAGGACACGCTTGCAAATTTGAGGTCAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATAAAACCAGATGCGATGAGCAGAACTGTGGGTTTGGATAACAGTGGGCTCGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGACGATGGCCTTGAGAAATTGGAGGAGACTGTAATAAGTACAAAACATATTGCTTTGGCAGTGAATGAAGAGCTGACTCTACACACTAGACTCATTGATGACTTGGATGAACACGTAGATGTTACAGATTCTCGTCTGAGGCGTGTGCAGAAGCACTTGGCAGTTTTAAACAAACGTACCAAGGGTGGTTGCTCCTGCTTGTGCATGCTTTTAGCAGTGGTTGGTATAGTTATTTTGGTGGTCGTCATATGGCTCTTGGTCAAATACTTGTAA 690 0.4275 MASSSDTWMKEYNEAMKLADDINSMISERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKSEKEMNRRKDTLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNSGLVGLQRQIMKEQDDGLEKLEETVISTKHIALAVNEELTLHTRLIDDLDEHVDVTDSRLRRVQKHLAVLNKRTKGGCSCLCMLLAVVGIVILVVVIWLLVKYL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1338 229 Pfam SNARE domain 170 221 IPR000727 -
Lja6g1338 229 Gene3D - 135 197 - -
Lja6g1338 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Lja6g1338 229 SMART tSNARE_6 128 195 IPR000727 -
Lja6g1338 229 CDD SNARE_Qc 136 193 - -
Lja6g1338 229 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 223 - -
Lja6g1338 229 SUPERFAMILY SNARE fusion complex 124 194 - -
Lja6g1338 229 PANTHER SYNTAXIN 1 223 IPR045242 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1338 1 229 SNARE and Associated Proteins AT1G16240 72.414 1.60e-122 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1338 K08503 - gmx:100799465 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1338 6 38429373 38433138 Lja6g1338 6 38429373 38433138 ECH
Lja6g1338 6 38429373 38433138 Lja6g1338 6 38429373 38433138 PCT