Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1325 ATGGCATCTTCAGATGATGAGGATGAGACTCAGCCGATATCTGTGTCGAATTACTATTTTGTTGATGACAAAGATGCGCTTGTTTCTTTTGCTGTGTTGCCAATTCAATGGAATAAGTCCGAGAGTCTGGACGGGAAGAACGAGAAGGTGTTCATCCACGGTGCTGCGGACAATGGGCTGCAGACGATTTTCATGCAAGTCATAGCGTGGAGCTTTGATCTTTCTTACGTGAGGCCTGAGATATCAGTGCTACCGAAGGATGGGAAGTGGGTCAAACTTCAGAAGCCGAGAAAGAGCTATGAGGATACCATAAGGACGATTTTCATCACCATTCATTTCCTGAGTCATGTGAAGAGGAATCCTGACATATCTGCTAAATCTATGTGGGATAACTTGAGTAAGAATAAGGAGTTTAGCTCCTATGAGGTTATGCCCTCGCAAAATGATTTGACAAACCATGTTACTTTGATGGGTGAAGCTGCCAAAAGGGATGCTGACTTAGCTAAATCCAAGCTTTTGCTCATGGTGCTGAAGTTCAAGAAAATTTCTGATGAGGAAGCTAAAGATTTAGCAAGACCTGGATTTATAATCGACGATAATGACAATGATATGATTGATGAAATGGGTGAGGAGTCAGATGAAGAGGATGGATTGTTTGATTCTGTTTGTGCGATTTGTGACAATGGGGGCAACATTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCAAATGAGGAGGATGGTGAAGAATCTTCTTGTGAATCTCTTGGTTTTACCCGAAAGGAAGTTGTTGAGAGCCAAAACTTCTATTGTAAGAATTGTCAATATAATAGGCACCAGTGCTTTGTATGTGGCAAGCTAGGCTGTTCTGACAAACTTTCTGGTGCTGAGGTCTTCAAATGTGCTTCAGCAACTTGTGGCTTCTTTTATCATCCGCACTGTGTTGCAAAGTTACTTCACCGATTGGTTGTGGATGCTCCAACAGAACTTGAGAGAAATATTGCTGGTGGTGAACCTTTTACTTGCCCTACTCATTTTTGTTGTGTCTGTAAAGAAATGGAAAACAAGAAGGAGCATGAGTTGCAATTTGCTGTTTGTAGGCGTTGTCCCAAGTCATTTCATCGTAAATGTTTGCCAAGAGAGATTGGTTTTGATGACATTGAGGATGAAGATATTATAACAAGGGCTTGGGAAGGACTTTTACCGAACAATCGCATTCTTATCTATTGCTTAAAGCATGAGATTGATGACGACATCGGAACTCCTATAAGAGATCATATAAATTTCCCAACTGATAAAGCTGCTGTACGAGAAATTAATACTGAGAAGACAAAACCTGCAACCAAGGACAGACTTAAATTGAACAAGAACAATGTTAAATCAGACAGTCAATTGGGTAAAAGAAGTGCTAAATCATCTAAACTTTCTGGTAAATTTTCATCTGAGAACGTTGGTATCAAGAAGTCTGAAAAGAGTTTTGGATCAAATATATTAAGGAAGAAAGCAATTGAAGCATCAAGGCACTTGAATGAAAGTAAGAGGTCAATCTCAAAGGAAACTGAAAGGTGTGACCACGAGGAAAGCAAGCCCTCAATGGGTGATGAACTGTATTCTATCTGGGAGAAGGGATTTAAGAAAACTAATTCCGGCAGTCAGGTTGATAATGTAGCTAAGAAAACCCTGTCTGTTAAGCCTACTAAGAAATTGAGTAGTGCATTGCCTCCATTAGATGCAGATTCAGAGAGGAGATTGCTGACTTTGTTTGAAGAAGCTACGTCATCAATTACTTTGGAGAATGTAATAAAAACACATAAATTTGCTTCTACTCATACTCACTCATTGAAAAGTGTTGTGGAGAAGACCATTACAGTGGGGAAGTTGGAAGGCTCAGTTGATGCTGTCCGAACAGCTCTGAGGATGCTGGAGGCCGGGCAAAACATTCGGGATGCAGAAGCTGTTTGTGGCCCCGATGTTCTACATCAGATATTTAAGTGGAAGGACAAGCTGAAAGTATACATGGCACCAGTTCTAAATGGTAATCGCTACACATCATATGGTCGCCATTTTACACAAGTGGAAAAACTGGAAGGGATTGTTGATAAACTGCAGTGGTATGTTCAAAATGGCGATACAATTGTGGACTTTTGTTGTGGAGCTAACGACTTCAGCACTCTTATGAAGAAAAAGCTTGAAGAGACGGGGAAGAAATGCTCATACAAAAACTATGATTTACTTCCAACAAAGAATGATTTTAATTTTGAGATGAGAGATTGGATGAGTGTCCAGCGAAAGGAGTTGCCTGAAGGGTCGCAATTGATCATGGGCCTCAATCCTCCCTTTGGGCTAAAAGCTGCTTTGGCTAACAAGTTTATTAACAAGGCTCTTGAGTTTGAACCAAAGCTCATGATTCTTATCGTACCACCAGAAACAGAGAGGCTAGATAGAAAACGGTCTCCGTACGATCTTGTGTGGGAGGATAAGAAGTTTCTATCAGGCAAGGTAAATAATAAATTATATTTTGTGGTAATGCATATTTTGATTGATACGGAGTCTCTGTTGTGTTCTGACTGCTGCCTTTCCCCCCCTGTTCCTGCCTTGCTTTCTCCCCAGTCATTTTATCTACCTGGATCTATTGATGCTAACGACAAGCAAATGGAACAATGGAATATAACGACACCCCCACTCTACCTTTGGAGCCGCCCGGACTGGACTGTTAAGCATAAGGGCATAGCCAAAGAGCACGGTCACCTGTTCAGCCAGCATGAAGTATCAAACATGGAAAGCCCTGATAATGAAGAAGCACCTGCTAGTCATACTATGGATGACAAGGATGGAAATGATGTCATGTTGGGTCATGATTCCTTGAGGTTAACTGATGATGAAGATCACACATCATCTATGAATGGAGGGCAGAAAGGAAGCTCGGCTCTTGGTAGTACCGATCGACAGAGTCAATGGGTGAGCAAGGCTGACAGTGACAAGTCCTCCTGGAAGAGGAAACGAACTGAGGAAAATGATGGAAGAGCTGTGACCTCACCAGCCAAAAGGCAGGCTATAAATCAAATGCATGAGGAAGAACTGGACCATAGCATATCTCATCCAATTGATAGAGGACCCTCCGTTGAAGGTTTTCAGCCCAAATCTTATTTGCTACCCCCGTATTCTGAGGCTGGTGATAGTGGTTATGGGCATTTAGAGCCGAGCTCTTTTGGGGTAGCCTATGTTGGGACCCAAAAGTACCTGAGAGAATCAGAGATGAGGCAACAGAGCGGGCTTTACGGGCTGCAGAATCCTGATTCTATGAGGAATGATTATCTATCTGGACATGATCCTGCTTATAACTTAGGATCTAGTTATTTGCCTCCTGGTTCAGTATCCGAGCCACCGTACATGATGACTGCACCAGCTATGCAACGTTATGCACCTCGCCTTGATGAGTTAAACCATGTCAGCAGGGTGGATCCTTTGAGGCCTGAACCTCCTATAATTGGTCGAATTGGCGCTTCTGAACATACATTGCCCCAACCTGGAAATGGAAATGGACTGCCGGGTTTTGCAACTGGTTCTCACCAATTTTATTCACGTCGGAATTCATCAGGTCGGTTCAATAGGTAA 3621 0.4231 MASSDDEDETQPISVSNYYFVDDKDALVSFAVLPIQWNKSESLDGKNEKVFIHGAADNGLQTIFMQVIAWSFDLSYVRPEISVLPKDGKWVKLQKPRKSYEDTIRTIFITIHFLSHVKRNPDISAKSMWDNLSKNKEFSSYEVMPSQNDLTNHVTLMGEAAKRDADLAKSKLLLMVLKFKKISDEEAKDLARPGFIIDDNDNDMIDEMGEESDEEDGLFDSVCAICDNGGNILCCDGKCMRSFHANEEDGEESSCESLGFTRKEVVESQNFYCKNCQYNRHQCFVCGKLGCSDKLSGAEVFKCASATCGFFYHPHCVAKLLHRLVVDAPTELERNIAGGEPFTCPTHFCCVCKEMENKKEHELQFAVCRRCPKSFHRKCLPREIGFDDIEDEDIITRAWEGLLPNNRILIYCLKHEIDDDIGTPIRDHINFPTDKAAVREINTEKTKPATKDRLKLNKNNVKSDSQLGKRSAKSSKLSGKFSSENVGIKKSEKSFGSNILRKKAIEASRHLNESKRSISKETERCDHEESKPSMGDELYSIWEKGFKKTNSGSQVDNVAKKTLSVKPTKKLSSALPPLDADSERRLLTLFEEATSSITLENVIKTHKFASTHTHSLKSVVEKTITVGKLEGSVDAVRTALRMLEAGQNIRDAEAVCGPDVLHQIFKWKDKLKVYMAPVLNGNRYTSYGRHFTQVEKLEGIVDKLQWYVQNGDTIVDFCCGANDFSTLMKKKLEETGKKCSYKNYDLLPTKNDFNFEMRDWMSVQRKELPEGSQLIMGLNPPFGLKAALANKFINKALEFEPKLMILIVPPETERLDRKRSPYDLVWEDKKFLSGKVNNKLYFVVMHILIDTESLLCSDCCLSPPVPALLSPQSFYLPGSIDANDKQMEQWNITTPPLYLWSRPDWTVKHKGIAKEHGHLFSQHEVSNMESPDNEEAPASHTMDDKDGNDVMLGHDSLRLTDDEDHTSSMNGGQKGSSALGSTDRQSQWVSKADSDKSSWKRKRTEENDGRAVTSPAKRQAINQMHEEELDHSISHPIDRGPSVEGFQPKSYLLPPYSEAGDSGYGHLEPSSFGVAYVGTQKYLRESEMRQQSGLYGLQNPDSMRNDYLSGHDPAYNLGSSYLPPGSVSEPPYMMTAPAMQRYAPRLDELNHVSRVDPLRPEPPIIGRIGASEHTLPQPGNGNGLPGFATGSHQFYSRRNSSGRFNR* 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1325 1206 MobiDBLite consensus disorder prediction 460 482 - -
Lja6g1325 1206 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 868 1201 - -
Lja6g1325 1206 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 836 - -
Lja6g1325 1206 CDD PHD2_NSD 282 347 - -
Lja6g1325 1206 MobiDBLite consensus disorder prediction 1184 1206 - -
Lja6g1325 1206 MobiDBLite consensus disorder prediction 511 533 - -
Lja6g1325 1206 MobiDBLite consensus disorder prediction 936 968 - -
Lja6g1325 1206 MobiDBLite consensus disorder prediction 1170 1206 - -
Lja6g1325 1206 MobiDBLite consensus disorder prediction 458 482 - -
Lja6g1325 1206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 279 IPR013083 -
Lja6g1325 1206 MobiDBLite consensus disorder prediction 994 1012 - -
Lja6g1325 1206 MobiDBLite consensus disorder prediction 924 1017 - -
Lja6g1325 1206 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 134 IPR022702 -
Lja6g1325 1206 SMART PHD_3 349 416 IPR001965 -
Lja6g1325 1206 SMART PHD_3 222 277 IPR001965 -
Lja6g1325 1206 SMART PHD_3 282 348 IPR001965 -
Lja6g1325 1206 MobiDBLite consensus disorder prediction 969 993 - -
Lja6g1325 1206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 371 IPR013083 -
Lja6g1325 1206 CDD PHD_SF 348 380 - -
Lja6g1325 1206 PANTHER ENHANCED DOWNY MILDEW PROTEIN 868 1201 - -
Lja6g1325 1206 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1325 Lja-Chr6 38193675 38206259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1325 211 323 PHD Transcription Factor Family AT3G14980 28.319 3.88e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1325 - - gmx:100803073 1593.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1325 6 38193675 38206259 Lja6g1325 6 38193675 38206259 ECH
Lja6g1325 6 38193675 38206259 Lja6g1325 6 38193675 38206259 PCT