Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1317 ATGGCAGCGGAAATGGCAGTGTCCTTTGCAATTGACCATCTACTTCCGCTGTTAACTGAAGAAGCCACTATGCTTAGAGGCATTCACAAAGGACTTGCATACATTAAAGATGAACTCGAAAGCATCCAAGCGTTCCTTAGGGATGCAGATAGAAGAGCTGCAACAGATGAAGAAAGTGAAGGAGTGAAAACATGGGTGAAGCAGGTGAGAGATGTTGCTTTCCGCATAGAAGACATCATTGATGACTACATGATCCATGTGGGGCAACAGCAGCAGCATCCTGGATGTGCAACTATAATTTGTAAGATTACAAACCTGATCAAAACTTTGAAGAGTCGTCATCAAATTGCTTCTGAGATTCAAGATATAAAGTCATGTGTTCGTGAAATCATGGATAAAAGTGATAGATATGGTTTCCAACGCCAACAAGAAGGATCAAGCAGCAGAGAAAATGTCAAGTGGCTTCCGGGTCGAGAGGCTGCTCTTTACATTGAGGAAGCTCAAGTTGTGGGCTTTGACGTGCCAAGAGAAAAACTGATTGGTTGTTGGTTGGTTGGGGGACCAGCAGAGCGCACTGTGATCTCTGTTGTGGCCATGGGAGGGCAGGGGAAAACCACTCTTGCCAAGAAAGTTTTTGACAACCGGAAGGTGATAGACCACTTTGATTGTCATGCTTGGATCACAGTATCTCAATCCTACTCCATAGAAGGGCTGCTGAGAGACATGTTGCGGCAGTTTGGCAATAAAAGGAGTGATGTTACTACAATGGATCGAAGGCAACTGATTGATGCGGTGAGAAACTGCTTGCAGCAAAAAAGGTACGTTGTCATGTTTGATGATGTGTGGAATGTGCTTTTTTGGGATGAGATTCAATTTGCTGTCGTTGATAATAAAAATGGATTGCATGAGTTGCTGCCTTTAACTCTTGACCAATCTTTAGAGCTGTTCTATAAGAAGGTATTCCAATTTGACTTTGATGGGCATTGTCCAGAAGATCTGATTGATATATCTCGTGCGATTGTTAAAAAATGCAATGGATTACCACTAGCAATTGTGGCCATTGGTGGTGTTTTATCTGGTAGAGAAAAAAAAGCACTTGAATGGGAAATGTTTTTTCAAAGTCTAAGTGAAGAGCTTAGGAAAAATCGCCATTTAGATCATATAACGAAGATTTTAGGTTTCAGCTATGATGATTTGCCTTACCATCTTAAACCTTGCTTCCTATATTTTGGAATGTACCCTGAAGATTATGAAGTCAAATCGAGAAGATTGATTATGCAGTGGATAGCAGAAGGGTTTGTTAAGGTGGAAAGGGGGCGAATCTTGGAGAAAGTTGATAAAGAATATTTAAGAGAGTTGGTTCATCGAAGTTTGGTGCTAGTATCAAGTCGCCACAATGGTGGAGTTAAAGTTAAACATTATCGTGTTCATGACGTATTGCGGGAGATGATCCTTACCAAATTTAAGGATTTAAGGTTTGGTCAATTGATCGGTGAAGGTGATCATCAGTCAATGCCAGTCTCAAGCCGACGTCTATCACTAGCAACTAATTCTGAAATTTTAATGAGAGGTGATAAAATGAGTTCACAGTTTCGGTCATTGCATATTTTCACAGATGAATTAAAAGGAGATATTTTGTGGAGAGTCCTTAAAGAATACACGCTATTGAAGGTACTTGATGGTGAGGATTTCAATGGGTTCTCTGTCCCTGGTAATATTGGTAATTTGGTCCACTTGAATTATTTAAGTCTACATGCAAATTATGGTTTTCCCATGTCCATCAGTAAGCTCCAGAACCTACAGACCTTGATTATACAGGGAGAAAATGAGTATGAGATTCCAAAGGAGCTTAGCAAGCTCCGAAGACTAAGACACCTTGTGGGCAACAACATGTCTTTAACTTCATTGAAGGATGGCATTGGAGGCTTGACTTCTCTCGAAACGCTAGAGAATGTGGAATTACGTTGCAATGCAATTAGAGAGCTCGGAAAGCTTAAGCAGTTAAGAGTGTTGGGATTGATCACTAAGGAGACACATAAGGAAAGTAGTCTATGGTCCTCATTAAATGAGATGCAACACTTGGAGAAGCTGACTCTTTTTACTGTTGAAATATGGGGATACATTGAATTGAACTTTATTTCACCTCTACTTTATTTTACCTGTAGTTCGAGACTGGGTTCCACAATTCCCAAATCTTGTCAAATTGATCTTGAAAAACTCCATGTTAATGGATGA 2235 0.4027 MAAEMAVSFAIDHLLPLLTEEATMLRGIHKGLAYIKDELESIQAFLRDADRRAATDEESEGVKTWVKQVRDVAFRIEDIIDDYMIHVGQQQQHPGCATIICKITNLIKTLKSRHQIASEIQDIKSCVREIMDKSDRYGFQRQQEGSSSRENVKWLPGREAALYIEEAQVVGFDVPREKLIGCWLVGGPAERTVISVVAMGGQGKTTLAKKVFDNRKVIDHFDCHAWITVSQSYSIEGLLRDMLRQFGNKRSDVTTMDRRQLIDAVRNCLQQKRYVVMFDDVWNVLFWDEIQFAVVDNKNGLHELLPLTLDQSLELFYKKVFQFDFDGHCPEDLIDISRAIVKKCNGLPLAIVAIGGVLSGREKKALEWEMFFQSLSEELRKNRHLDHITKILGFSYDDLPYHLKPCFLYFGMYPEDYEVKSRRLIMQWIAEGFVKVERGRILEKVDKEYLRELVHRSLVLVSSRHNGGVKVKHYRVHDVLREMILTKFKDLRFGQLIGEGDHQSMPVSSRRLSLATNSEILMRGDKMSSQFRSLHIFTDELKGDILWRVLKEYTLLKVLDGEDFNGFSVPGNIGNLVHLNYLSLHANYGFPMSISKLQNLQTLIIQGENEYEIPKELSKLRRLRHLVGNNMSLTSLKDGIGGLTSLETLENVELRCNAIRELGKLKQLRVLGLITKETHKESSLWSSLNEMQHLEKLTLFTVEIWGYIELNFISPLLYFTCSSRLGSTIPKSCQIDLEKLHVNG* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1317 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 410 IPR027417 -
Lja6g1317 744 SUPERFAMILY L domain-like 475 730 - -
Lja6g1317 744 Gene3D Ribonuclease Inhibitor 523 744 IPR032675 -
Lja6g1317 744 Gene3D - 396 487 IPR036388 -
Lja6g1317 744 PANTHER - 32 713 - -
Lja6g1317 744 PRINTS Disease resistance protein signature 344 358 - -
Lja6g1317 744 PRINTS Disease resistance protein signature 595 611 - -
Lja6g1317 744 PRINTS Disease resistance protein signature 268 282 - -
Lja6g1317 744 PRINTS Disease resistance protein signature 193 208 - -
Lja6g1317 744 Pfam Rx N-terminal domain 6 94 IPR041118 -
Lja6g1317 744 Gene3D - 307 395 IPR042197 -
Lja6g1317 744 Gene3D - 161 305 IPR027417 -
Lja6g1317 744 CDD RX-CC_like 3 132 IPR038005 -
Lja6g1317 744 Pfam NB-ARC domain 306 398 IPR002182 GO:0043531
Lja6g1317 744 Pfam NB-ARC domain 184 302 IPR002182 GO:0043531
Lja6g1317 744 Gene3D - 5 117 - -
Lja6g1317 744 PANTHER DISEASE RESISTANCE PROTEIN RP 32 713 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1317 Lja-Chr6 38047709 38052028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1317 188 377 WRKY Transcription Factor Family AT5G45050 26.415 2.14e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1317 K13457 - lja:Lj0g3v0276849.1 888.641