Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1316 ATGGCAGCGGAAATGGCAGTGTCATTTGCAATTGATCATCTGCTTCCACTGTTAACTGAAGAAGTCACTATGCTTAGAGGCATTCACAAAGAACTTGCATACATTAAAGACGAACTGGAAAGCATCCAAGCGTTCCTTAAGGATGCAGATAGAAGAGCTGCAACAGATGAAGAAAGTGAAGGAGTGAAAACATGGGTGAAGCAGGTGAGAGATGTTGCTTTCCGCATAGAAGACATCATTGATGACTACATGATCCATGTGGGACAACAACAACAACAACAGCAGCTACAGCAGCCTGGATGTGCAATTTTAATTTGTAAGATTACAAACCTGATCAAAACTTTGAAGAGTCGTCATCAAATTGCTTCTGAGATTCAAGAAATCAAGTCATGTGTTCGTGAAATCAAGGATAGAAGTGACAGATATGGTTTCCAACGCCAACAAGAAGGATCAAGCAGCAGAGAAAATGACAAGTGGCTTCCCGGTCGAGAGGCCGCTATTTACATTGAGGAAGCTCAAGTTGTGGGGTTTGAAGCACCAAGAGATAAATTGATCAATTGGTTGGTGGAGGGAAGAGCAGAGCGCACTGTCGTCTCTGTTGTGGCAATGGGAGGGCAGGGGAAAACCACTCTTGCCAAGAAAGTTTTTGACAACCGGAAGGTGATAGACCACTTTGATTGTCATGCTTGGATCACAGTATCTCAATCCTACTCCATAGAAGGGATGCTAAGAGACATGTTGCAGAAGTTTTACAAGGAGACTAAAAAGACTCTTCCTGATGGTATTTCTACAATGGATCGAATGTCATTGATTGATGAGCTCAGGAACTGCTTGCAGCAAAATAGGTACGTTATTGTGTTTGATGATGTGTGGAACGTACGTTTTTGGGATGAGATTCAATTTTCTTTGGTTGATAATAAAAATGGAAGTAGGATATTAATGACTACAAGGAACATGGATGTTGCGGTGTCTTGTAGAATCTCTTCTCCTTTTGTTGAAAAGGCATTCCAATTTGACTTTGATGGGCATTGTCCAGAAGATCTCATTGATATATCTCGCGTCATTGTTAAAAAATGCAATGGATTACCACTAGCAATTGTGGCCATTGGTGGTGTTTTATCTGGCAGAAAAAAAAATGCACTTGAGTGGGAAAAGTTTTGTCAAAATCTAAGTGCAGAGCTCGAGAAAAATCTCCATTTAGATCATATAACGAAGATTTTAGGTTTCAGTTATGATGATTTGCCTTACCATCTTAAACCTTGCTTCCTGTATTTTGGAATGTATCCTGAAGATTATGAAGTCTGTTCGAGAAGATTGATTATGCAGTGGATAGCAGAAGGGTTTGTTAAGGTGGAAAGGGGGCGAATTTTGGAGAAAGTTGGAAAACAATATTTAAGAGAGTTGGTTCATAGAAGTTTGGTGTTAGTATCAAGTCGCTACCATAATGGAGTTAAAGTAAAATATTATCGGGTTCATGACGTATTGCGGGAGATGATCCTTACAAAATTTAAGGATTTAAGCTTTGGTCAGTTCATCGGTGAAGGTGATGAGTCAATGCCAGTCTCAAGCCGACGCCTATCACTAGCAACTAATTCTGAAATTTTAATGAGAGGTGATAAAATGAGTTCACAGTTTCGGTCATTGCATATTTTCACAAGGAACTTAGATGAAGATATTTTGTGTAGAATCCGTCAAGATTACACGCTATTGAAGGTACTTGATGCTGAGGATTTCAATTGGTACTCTGTTCCTATTAACATAGGGAATTTGGTCCACTTGAAGTATTTAAGTCTCCGTTCAGATTATAGTTATCTCATGTCCATCAGTAAGTTCCAGAACCTAGAGACCTTGAATATATGGGGAGTAAATTTGCATCTGATGCCAAAGGAGCTTAGCAAGCTCCAAAGACTAAGACACCTTGTCGGCAACAGAATCTCTTTAACTCAATTGAAGGATGACATTGGAGGCTTGATATCTCTCCAAACGCTAGAGCGTGTGGAAGTAGATGATAATGAGATAAAGATAATTAGAGAGCTTGGAAAGCTTAAGCAGTTAAGAGTGTGTGGATTGGCCATTAAGGGGAAACATGTGGAAAGTACTCTATGCTCCTCATTAAATGAGATGCAGCACTTGGAGAAACTTTCTCTTTATACAATAGGGAAGGACCTTGATTTGAACTTCATTTCTCCTCTACCTATGTTTCAGAAACTTCTACTCAAAGGGTGGTTACATGTATTTCCAGAGTGGGTTCCACATCTCCCAAATCTTGTCAAATTGACCTTGAAAGAGTCCAGGTTAATGGATGATCCATTGAAATCACTACAAAATATGCCAAAATTGTCATCTCTCACACTCTATGATTGTTATAAAGGTCAAAGTTTGCATTTTGAAGGTGGAGGGTTTCAGAAACTAGAGGAACTGCACCTTGAAGGCTTGTATAACTTGAAATCCATCCTTATCGATAAAGGAGCACTGCCTTCTCTTAAAAAGCTTTCGGTATGGAATATGCCTAATCGTAAACTCAAGATTCTACTACCCCCTGGCATCCATCGCTTAGAGACAATTGTAGTGGTCAACATTGAAAATGCATCATTTGAATTCCTTCGCGAAGAACTTTCTTGA 2622 0.3951 MAAEMAVSFAIDHLLPLLTEEVTMLRGIHKELAYIKDELESIQAFLKDADRRAATDEESEGVKTWVKQVRDVAFRIEDIIDDYMIHVGQQQQQQQLQQPGCAILICKITNLIKTLKSRHQIASEIQEIKSCVREIKDRSDRYGFQRQQEGSSSRENDKWLPGREAAIYIEEAQVVGFEAPRDKLINWLVEGRAERTVVSVVAMGGQGKTTLAKKVFDNRKVIDHFDCHAWITVSQSYSIEGMLRDMLQKFYKETKKTLPDGISTMDRMSLIDELRNCLQQNRYVIVFDDVWNVRFWDEIQFSLVDNKNGSRILMTTRNMDVAVSCRISSPFVEKAFQFDFDGHCPEDLIDISRVIVKKCNGLPLAIVAIGGVLSGRKKNALEWEKFCQNLSAELEKNLHLDHITKILGFSYDDLPYHLKPCFLYFGMYPEDYEVCSRRLIMQWIAEGFVKVERGRILEKVGKQYLRELVHRSLVLVSSRYHNGVKVKYYRVHDVLREMILTKFKDLSFGQFIGEGDESMPVSSRRLSLATNSEILMRGDKMSSQFRSLHIFTRNLDEDILCRIRQDYTLLKVLDAEDFNWYSVPINIGNLVHLKYLSLRSDYSYLMSISKFQNLETLNIWGVNLHLMPKELSKLQRLRHLVGNRISLTQLKDDIGGLISLQTLERVEVDDNEIKIIRELGKLKQLRVCGLAIKGKHVESTLCSSLNEMQHLEKLSLYTIGKDLDLNFISPLPMFQKLLLKGWLHVFPEWVPHLPNLVKLTLKESRLMDDPLKSLQNMPKLSSLTLYDCYKGQSLHFEGGGFQKLEELHLEGLYNLKSILIDKGALPSLKKLSVWNMPNRKLKILLPPGIHRLETIVVVNIENASFEFLREELS* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1316 873 Gene3D - 411 502 IPR036388 -
Lja6g1316 873 Gene3D Ribonuclease Inhibitor 537 873 IPR032675 -
Lja6g1316 873 Pfam Rx N-terminal domain 6 96 IPR041118 -
Lja6g1316 873 PANTHER DISEASE RESISTANCE PROTEIN RP 31 837 IPR044974 GO:0006952
Lja6g1316 873 Pfam NB-ARC domain 179 413 IPR002182 GO:0043531
Lja6g1316 873 SUPERFAMILY L domain-like 490 862 - -
Lja6g1316 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 425 IPR027417 -
Lja6g1316 873 Gene3D - 164 331 IPR027417 -
Lja6g1316 873 Gene3D - 332 410 IPR042197 -
Lja6g1316 873 Gene3D - 5 122 - -
Lja6g1316 873 CDD RX-CC_like 3 137 IPR038005 -
Lja6g1316 873 PRINTS Disease resistance protein signature 751 767 - -
Lja6g1316 873 PRINTS Disease resistance protein signature 277 291 - -
Lja6g1316 873 PRINTS Disease resistance protein signature 197 212 - -
Lja6g1316 873 PRINTS Disease resistance protein signature 359 373 - -
Lja6g1316 873 PANTHER - 31 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1316 Lja-Chr6 38024379 38027054 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1316 198 818 WRKY Transcription Factor Family AT5G45050 24.211 4.50e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1316 K13457 - gmx:100819372 830.476