Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1312 ATGGGTATCTCTCGTGATTCCATGCACAAGAGGCGCGCCACTGGTGGTAAAAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTCGGGAGGCAACCAGCTAACACCAAGCTTTCAAGCAACAAAACTGTTAGGAGGATTAGGGTTCGAGGTGGGAATGTGAAGTGGCGTGCGTTGAGGCTTGATACTGGAAACTTCTCCTGGGGGAGTGAAACTGTGACCCGCAAAACTAGAATTCTTGATGTGGTGTATAATGCATCCAACAATGAGCTGGTTCGTACTCAGACATTGGTCAAGGGTGCCATTATTCAGGTTGATGCAGCTCCTTTCAAGCAGTGGTATCTCCAACATTATGGTGTTGACCTTGGTCGCAAGAAGAAGGGTGCAACTGCTGCCAAGAAGGAAGGAGAGGATGTTGAAACTGCCACTGAGGAGGCAAAAAAGAGCAACCATGTCTTAAGAAAATTGGAAAAGCGTACAGAGAACCGGACACTTGATGCTCATATTGAAGAACAATTTGGAGGTGGCCGCCTTTTAGCCTGTATCTCATCCCGACCCGGTCAATGTGGTCGTTCTGATGGATATATATTAGAAGGCAAAGAGCTAGAATTCTACATGAAGAAGCTTCAGAAGAAGAAGGGCAAGGGTGCTGCGTAA 657 0.4688 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSETVTRKTRILDVVYNASNNELVRTQTLVKGAIIQVDAAPFKQWYLQHYGVDLGRKKKGATAAKKEGEDVETATEEAKKSNHVLRKLEKRTENRTLDAHIEEQFGGGRLLACISSRPGQCGRSDGYILEGKELEFYMKKLQKKKGKGAA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1312 218 MobiDBLite consensus disorder prediction 1 41 - -
Lja6g1312 218 TIGRFAM eS8: ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lja6g1312 218 MobiDBLite consensus disorder prediction 11 26 - -
Lja6g1312 218 Gene3D - 27 213 - -
Lja6g1312 218 Gene3D Ribosomal protein S8e, subdomain 108 176 IPR042563 -
Lja6g1312 218 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Lja6g1312 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Lja6g1312 218 CDD Ribosomal_S8e_like 5 197 - -
Lja6g1312 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 - -
Lja6g1312 218 Coils Coil 139 159 - -
Lja6g1312 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1312 Lja-Chr6 37969396 37972413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1312 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.010 1.34e-125 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1312 K02995 - bvg:104906289 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1312 6 37969396 37972413 Lja6g1312 6 37969396 37972413 ECH