Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1304 ATGGAATCAGATCTTGGCAAGCTCTTCATTGGAGGAATATCTTGGGACACTAATGAGGAACATCTTAAAGAATATTTTGGCAAGTATGGGGAGGTGATAGAGGTTGTGATCATGAGAGATCGCTTAACAGGTCGTGCTCGTGGTTTCGGTTTCGTTGTCTTTGCTGATTCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCAGAATGTCAATAGACAGTCAGGTAGTGCACGTGGATCTCCTGGTCCTGGACGTACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACCATCACTGAGAGTGATTTTAAAAAGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTGATGTATGATCACAATACTCAGAGGCCAAGAGGTTTTGGCTTTATCACATATGATTCAGAAGAAGCTGTGGATAAAGTTCTCTATAAAACGTTTCATGAACTCAATGCAAAGATGGTTGAAGTCAAGAGAGCAGTTCCTAAAGAGCTTTCACCTGATCCCAACCGGAGCCCGTTGATAGGATATAACTATGGTTTGAATAGAGCCAGTAGCTACCTAAATATTTATGCTCAAGGTTATAGTATGAGTCCAATAGGAGGTCATGGAGTCAGGATGAATGGTAGGTTTAGCCCACTTACTAGTGTTAGAACTGGGTTTTCCCCTTTTGGAAACACTGGCTATGGAATGGGGATGAATTTGGATTCAGGATTGAACCCGAACTTTGGAGGAAATTCTAATTATGGGAATAATTTTGGATATGGTCGGATATTTAGTCCTTTCTATGGTGGCACCACAAGCAGATATACAACTTCTATTTGCTATAATGGGGGAATGTTTGGGGAAATGAAAATGGGGGGCCTGAATAGTGCCAATAACTCAGGCAACCCTGGTGCATTCTTGGGATCTGGAAGGGGTAATTTCGGTGCTTCAATCAGAAATAATAATTGGGATCCGTCCATTGCAGCTCAGGGTGGAGGGGCTATGTCTAACTATGCAGCTGGTAGTAATGTTTATGAAGGTGGAGATAGAAATTTTGGATTAGGTGGAGGAGGGTATGGAAGAAACAACAATACATGTGTGACTCCATCTTCTGCATTTAATGCATCTATTGGTGGTTATGAAGGATCATATGGGGACTTATACCGTACCGGAAGTGGTTCAGTTTACAATGACTCTACTTGGCGATCTGCTACTTCTGAGATAGATGATTCTAGCTCATTTGGTTATGATCTTGGTGGTATAGAGTCAAATGACCCAGTAAAGAATTCTGAGGGTTATATTGGAAACTACAATGTTACAAGTAGACAATCTAATAGAGAATTTTTGCTTGCAACTTAG 1407 0.4072 MESDLGKLFIGGISWDTNEEHLKEYFGKYGEVIEVVIMRDRLTGRARGFGFVVFADSAVAERVIMDKHIIDGRTVEAKKAVPRDDQQNVNRQSGSARGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNAKMVEVKRAVPKELSPDPNRSPLIGYNYGLNRASSYLNIYAQGYSMSPIGGHGVRMNGRFSPLTSVRTGFSPFGNTGYGMGMNLDSGLNPNFGGNSNYGNNFGYGRIFSPFYGGTTSRYTTSICYNGGMFGEMKMGGLNSANNSGNPGAFLGSGRGNFGASIRNNNWDPSIAAQGGGAMSNYAAGSNVYEGGDRNFGLGGGGYGRNNNTCVTPSSAFNASIGGYEGSYGDLYRTGSGSVYNDSTWRSATSEIDDSSSFGYDLGGIESNDPVKNSEGYIGNYNVTSRQSNREFLLAT* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1304 468 SUPERFAMILY RNA-binding domain, RBD 105 246 IPR035979 GO:0003676
Lja6g1304 468 MobiDBLite consensus disorder prediction 78 105 - -
Lja6g1304 468 Gene3D - 6 88 IPR012677 -
Lja6g1304 468 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 464 - -
Lja6g1304 468 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Lja6g1304 468 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Lja6g1304 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lja6g1304 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lja6g1304 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Lja6g1304 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lja6g1304 468 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lja6g1304 468 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lja6g1304 468 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 464 - -
Lja6g1304 468 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lja6g1304 468 Gene3D - 103 190 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1304 Lja-Chr6 37879155 37881229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1304 2 169 Eukaryotic Initiation Factors Gene Family AT2G36660 27.528 1.30e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1304 K14411 - gmx:100805131 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1304 6 37879155 37881229 Lja6g1304 6 37879155 37881229 ECH
Lja6g1304 6 37879155 37881229 Lja6g1304 6 37879155 37881229 PCT