LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g1301	ATGGACGCCGGCGAAGCCCACTCCGACCTCCGGCGAAATGGTGACGATCCGACCCGACCCGACTCGCGTTCTGATTCTGCTACCGACGGAGCTGCGGCCACTGGCGGTGCTAGGTACAAGCTGATGATGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCGTCACGATTCCGCCGGGGCTTAGTCCGTCGTCGTTTCTGGAGTCCCCGGTGCTGCTCTCGAACATGAAGGTGGAACCTTCACCTACCACAGGGTCCCTTCCTAGGCTTCAACAAACGGCACATGGTTTTGTGATTTCTGCGGCATTTCCCGTAGCCACTGTATGCTTCAATACCAATACTGTTGATAACAGAAAATTGAGCTTCTTTGATCTTAAATCACACTGTAGATCAAATATGGTTCCTGCAGACTTTGAAGACCATGTAAGTGATAAATCTACTCAAAATGGTCAAGTAAAAGCAGTCAAAAGTGAAATAGCAGTCCCTTCAAATGAAGTAGGTCGATCATCACCTGTTCACATGGTTAGTTCTGGGGCTAGTACTCATGTTGAAGTCAATTCACATGAATTAAACCCAAGGGGCAACATAGCAACTGGGCCCCAAGCATCACAAATTGAGGGTGGGGCTGGTGGACTTCCAGTTGCTGCTGACAGAGCATCTGATGATGGATACAATTGGCGAAAATATGGGCAAAAACTTGTTAAAGGAAGTGAATTTCCCCGCAGTTATTACAAATGTACACATCCTAATTGTGAAGTGAAGAAACTATTTGAACGCTCTCATGATGGGAAAATCACTGAGATAATTTACAAGGGAACCCATGATCATCCTAAACCTCCACCAAACCGCCGATACTCTACTGGAACTATTATATCTATGCCAGAAGAGAGATATGATAAGGCTTATTTGACTAGCAGAGATGACAAAGGATTCAATAATTATGGCCAGGTGTCTCACACAGCTGAGCCTGACAGTACTCCAGAACTATCACCTTCAGCAACAAATGATGATAGTGTAGAGGGTATTGGGTTTTTGTCAAACCGGAATAATGATGAGGTTGATGATGATGATCCCTTCTTAAAGCGAAGAAAAATGGATCTCGGAAATATTGACATCACTCCTGTAGTTAAGCCTATCCGAGAGCCACGGGTCGTTGTACAGACTCTGAGTGAGGTTGATATTTTGGATGATGGTTATCGTTGGCGTAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAGTGCACGAATGCTGGTTGCCCCGTTAGAAAACACGTGGAGAGGGCATCTCATGATCCAAAAGCTGTAATAACCACATATGAGGGTAAGCACAATCATGATGTACCAATTGCAAGGAACAGTTGCCATGATCACATGGCAGGACAAGCAACTGCACAGACAAGAATTAGGGCAGAAGAAAGTGATACTATTAGCCTTGATCTTGGTATGGGGATTAGTCAAGCTGCTGAAAATAGATCAAACAATCAAGGGAGGATGGTGCTTTCTGAATTTGGGGACAGTCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTGCCCCTGCTTCAGTATACTTAGGTGTACTAAATAACAATAACTCACATCCATATGGTTCTAAAGAAAATCCAAGTGATAGAAACCATTCTGCTTATCCTTGCCCCCAGAACATGGGAAGAATTCTGATGGGTCCCTGA	1719	0.4508	MDAGEAHSDLRRNGDDPTRPDSRSDSATDGAAATGGARYKLMMPAKLPISRSPCVTIPPGLSPSSFLESPVLLSNMKVEPSPTTGSLPRLQQTAHGFVISAAFPVATVCFNTNTVDNRKLSFFDLKSHCRSNMVPADFEDHVSDKSTQNGQVKAVKSEIAVPSNEVGRSSPVHMVSSGASTHVEVNSHELNPRGNIATGPQASQIEGGAGGLPVAADRASDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGKITEIIYKGTHDHPKPPPNRRYSTGTIISMPEERYDKAYLTSRDDKGFNNYGQVSHTAEPDSTPELSPSATNDDSVEGIGFLSNRNNDEVDDDDPFLKRRKMDLGNIDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPIARNSCHDHMAGQATAQTRIRAEESDTISLDLGMGISQAAENRSNNQGRMVLSEFGDSQTHTSNSNFKFVHTAPASVYLGVLNNNNSHPYGSKENPSDRNHSAYPCPQNMGRILMGP*	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g1301	572	MobiDBLite	consensus disorder prediction	1	35	-	-
	Lja6g1301	572	Gene3D	WRKY domain	214	280	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lja6g1301	572	Gene3D	WRKY domain	380	456	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lja6g1301	572	MobiDBLite	consensus disorder prediction	305	355	-	-
	Lja6g1301	572	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lja6g1301	572	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	25	545	-	-
	Lja6g1301	572	MobiDBLite	consensus disorder prediction	542	559	-	-
	Lja6g1301	572	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	25	545	IPR044810	GO:0003700
	Lja6g1301	572	MobiDBLite	consensus disorder prediction	309	345	-	-
	Lja6g1301	572	MobiDBLite	consensus disorder prediction	542	572	-	-
	Lja6g1301	572	ProSiteProfiles	WRKY domain profile.	390	455	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja6g1301	572	ProSiteProfiles	WRKY domain profile.	215	279	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja6g1301	572	SMART	WRKY_cls	395	454	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja6g1301	572	SMART	WRKY_cls	220	278	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja6g1301	572	MobiDBLite	consensus disorder prediction	197	216	-	-
	Lja6g1301	572	Pfam	WRKY DNA -binding domain	396	452	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja6g1301	572	Pfam	WRKY DNA -binding domain	221	277	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja6g1301	572	SUPERFAMILY	WRKY DNA-binding domain	219	279	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lja6g1301	572	SUPERFAMILY	WRKY DNA-binding domain	387	455	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g1301	Lja-Chr6	37821279	37828350	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g1301	42	572	WRKY Transcription Factor Family	AT4G26640	52.364	1.74e-166	482

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lja6g1301		WRKY	1.4e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g1301	-		-	gmx:100781491	869.381

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja6g1301	6	37821279	37828350	Lja6g1301	6	37821279	37828350	ECH
	Lja6g1301	6	37821279	37828350	Lja6g1301	6	37821279	37828350	PCT