Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1300 ATGCAGACATCTCAAAAGCATGAAATATCTTACGGCTCTGGCAGGTTTTATGTCGAGCCTGTGCAGAATCTGGAATCATATTGTTTACCATCAAGTGAGAACCTAGATAATTACTCTTCCTCTGATAACAGCACCCAAATAACTTACCCTTCAGTCCAGACTTTAGAACAATATTGCACCCATGAATCTGCTTCAACAAGCAACAGTTTCCCTTACCAAAATTCTCCATCTAATGTCAGTTTTTCATCTGACAACAGCCCAGTGTCAAAGCAAGAGTCAAACTCATATGTGTTTCGGCCGCAGCAATCTGTTGAAATTTTTAACGGCGCACCTGAGGATGATTATTACTCGGCACAAGACTTTGATGACCTGAGGCATAAGATAAGAGAGCTGGAAACCGCAATGCTGGGACCGAATACAGATATGCTAGACACATATGATGCTGTGATTGCAGAAGAATCTGCTTCGTTTTTGTTAGCGGAAGAGAAGTGGAACAAAATGATGGAGATAAAATCTAGAGGGGATTTGAAAGAGATACTTTATGCTTGTGCAAAAGCAATGGCTGGGAATGATATGGAGATAACTGAATGTTTGGTGTCGGAGTTGCGCAAAATGGTGTCGATTTCTGGCAACCCGATCCAACGGTTGGGAGCGTACATGTTGGAGGCGCTTGTTGCAAGGATGGCCTCTTCAGGAAGCACAATCTACAAATCCTTGAAATGTACTGTGCCTACTGGAAATGAACTACTTTCTTACATGAATGTGCTTTATGAGATATGTCCATACTTCAAGTTTGGATATATGTCAGCAAATGGAGCAATTGCTGAAGCTATGAAGGAGGAAAGAGAAGTCCACATAATTGACTTTCAGATTAGCCAGGGAACACAGTGGGTGAGCCTAATCCAAGCTCTTGCTCACCGACCCGGAGGACCGCCAAAGGTGAGAATAACCGGTGTTGATGACACATTTTCATCTTATGCCCGGGGAGGGGGACTTGATATTGTCGGAGAGAGGCTATCAACACTTGCACAGTCTTGCCATGTTCCTTTTGAGTTCCATGCTGTCAGAGCTACTGCTCCTGAGCTGCAACTTGAAGACTTTGATCTTCGACCTTATGAAGCTGTGGCTGTGAACTTTGCCATTATGCTGCACCATGTACCAGATGAAAGCGTGAGCAGCCATAATCACCGGGACCGGTTGTTGAAATTGGCTAAGTGTTTGTCTCCAAAGGTAGTCACTCTGGTGGAGCAGGAATTCAATACTAACAACGCTCCGTTCTTGCAGCGTTTCGTTGAGACAATGAACTACTACCAGGCTGTTTTTGAATCAATTGATGTTGTTCTTCCAAGGGAGCACAAGGAGAGGATCAATGTGGAACAGCATTGTTTGGCTCGCGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAGAGAGTGGAACGTCATGAACTTCTGAATAAGTGGAGAATGCGGTTCGCCAGTGCTGGATTTACACCTTATCCATTGAACTCCTATATAAATTCTTCAATCAAGGATCTTCTGGAGAGCTACCGCGGACATTACACCTTAGAAGAGAGAGATGGTGCACTGTTTCTTGGTTGGATGAATCAAGTTCTTGTTGCCTCTTGTGCTTGGAGATGA 1641 0.4406 MQTSQKHEISYGSGRFYVEPVQNLESYCLPSSENLDNYSSSDNSTQITYPSVQTLEQYCTHESASTSNSFPYQNSPSNVSFSSDNSPVSKQESNSYVFRPQQSVEIFNGAPEDDYYSAQDFDDLRHKIRELETAMLGPNTDMLDTYDAVIAEESASFLLAEEKWNKMMEIKSRGDLKEILYACAKAMAGNDMEITECLVSELRKMVSISGNPIQRLGAYMLEALVARMASSGSTIYKSLKCTVPTGNELLSYMNVLYEICPYFKFGYMSANGAIAEAMKEEREVHIIDFQISQGTQWVSLIQALAHRPGGPPKVRITGVDDTFSSYARGGGLDIVGERLSTLAQSCHVPFEFHAVRATAPELQLEDFDLRPYEAVAVNFAIMLHHVPDESVSSHNHRDRLLKLAKCLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYQAVFESIDVVLPREHKERINVEQHCLAREVVNLVACEGAERVERHELLNKWRMRFASAGFTPYPLNSYINSSIKDLLESYRGHYTLEERDGALFLGWMNQVLVASCAWR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1300 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 545 IPR005202 -
Lja6g1300 546 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 545 - -
Lja6g1300 546 Pfam GRAS domain family 177 546 IPR005202 -
Lja6g1300 546 MobiDBLite consensus disorder prediction 65 95 - -
Lja6g1300 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1300 Lja-Chr6 37810293 37814332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1300 1 546 GRAS Transcription Factor Family AT1G50600 55.898 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja6g1300 GRAS 9.6e-132 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1300 - - gmx:100785400 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1300 6 37810293 37814332 Lja6g1300 6 37810293 37814332 ECH
Lja6g1300 6 37810293 37814332 Lja6g1300 6 37810293 37814332 PCT