Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1296 ATGGCTGAAATGGCAGTGTCGTTTGCTGTTGATCATCTGCTTCCACTGTTAACAGATGAAGCAACTCTGCTCAGAGGCTTGCACAGAGGATTTGGAGACATTAAAGATGAACTAGAAAGCATCCAAGCCTTCCTCAAGGATGCAGATAGAAGAGCTGCAGCAGATGAAGGAAGTGAAGGAGTGAAAACATGGGTGAAGCAAGTGAGACAAGTTGCTTTCCAAATAGAAGACATCATTGATGACTACTTGATCCATTTGGGACAACAACAACACCAGCAACAAGAGCATCAGCATGGATGTGCAGCTCCACTCCATAATATTGCTGAACTGATCATAACCTTGAAGCGTCGTCATCAAATTGCTTCTGAGATTCAAGAAATCAAGTCATGTGTTCGTGAAATCAAGGACAGAAGTGACAGATATGGCTTCCAACGCCAACAACAAGTATCAAGCAGCAGGGAAAATGCCAAATGGTATGACCCCCGAACAGCTGCTCTTTACATTGATGAAGCTGAAGTTCTTGGGTTTGAAGTGCCAAAAGATGAACTAATTGGTTGGTTGCTAAAAGGAAGAGCAGAACGCGCGGTTATATCAGTGGTGGGAATGGGAGGACAAGGAAAAACCACTCTGGCAAAAAAAGATTTTGACAACCACAAGGTGATTGCTCACTTTGATTGCCATGCTTGGATCACAGTATCTCAATCCTATACTGTAGAAGGATTGTTGAGAGACATGCTGCACAAGTTTTGTGGAGATCCTCCTCAGGGTATTCTTCAAATGGATCGAGATTCATTGATTAATGCAGTTAGAGACTACTTGCAGCAAAAGAGGTACGTTGTTGTGTTTGATGATGTGTGGAACAAACATTTTTGGGATGAAATTCAATTTGCTGTGATTGACAATAAAAATGGAAGTAGGATAGTTATCACCACAAGAAAAATGGAGGTAATCATGTCTTGTAAGAAATCTTCTCTGGTTCAAGTGCATGAGTTGCAACCTTTAACTCAAGAGCAGTCCTTGGAGTTGTTTTATAAGAAGGCATTCCGATTTGACTTTGATGGATGTTGTCCAGAAGAACTTACTGAGATATCTTCTAAAATTGTTAAAAAATGCAATGGATTACCACTAGCAATAGTAACCATTGGTGGTTTTTTATCTACAAAAGAGAAAAATCCATTTGAATGGACAAGGTTTAGTCAAAATCTGAGTTCAGAGCTGGACAAAGATTCTCATTTGATTGGTATAACAAAAATTTTGGGTTTTAGTTATGATGACTTGCCTTACTATCTAAAGTCATGCTTCCTGTATTTTGGAGTATATCCTGAAGATTATGAAGTCAAATCGGAAAGATTGATTCGGCAGTGGATAGCTGAAGGGTTTGTCAAAGAGGAAAAAGGGAAAACCTTGGCGGAAGTTGCTCAAGGATATTTAACAGAGTTGATCCATAGGAGTTTGGTGCAAGTTTCTTCAGTTAGCATTGATGGCAAAGCTGAAGGTTGTCGTGTACATGACCTGATACGTGAAATGATCCTTAAAAAACTTGAGGATTTAAGTTTTTGCAAGTTCATTGGTGAAGATGATCAGTCACGCTCAGCTTTAAGTGGGATAAGTCGGCGCCTATCAATAGCAACCACTTCCAATGATTTAATTGGAAATATTAGAAGCTCTCACATACGATCATTGCTTTTTTTCACAAATGAAGAATTACCTGAATACCTTGTCAGAGAAATCCCTACAAAATACAAGCTAAAGGTACTTGATTTTCAATTAAATAAGTTGACTTGTGTTCCTAAAGATTTAGGGAACTTGATTCACTTGAAGTATTTAAGCTTAAGGACAACAGGCATATGGAGTCTTCCAAAATGCATTGGTAAGCTCCAGCACCTTGAGACCTTGGATCTAAGGGGGACAAGTGTGAGAGACATACCAAAGGAGGTTAGCAAGCTTAGAAAGCTGCAACATCTTCTGGGAGATAGTATGTGTTTGGTTCAACTAAAAGATGGTATTGGAGGCATGACATCCCTACAAACGCTAAAGAAGGTGTATATAGATGAAGATGGAGGAGTGGATCTAATTAGAGAGCTGGGAAAGCTAAGGCTGTTAAGGGAATTGAGTCTGACTAATGTTAGGGGAGAGCACGGAAGCACTCTAAGTTCCTCAATAAATGTCATGGAACACTTGGAGAAACTACATATTCACACAACAATATCTGAAGAGATTGATTTGCATTTGATTTCACCCCCACAAAAGTTTCAGGATCTTTACCTGTGTGGGAAGATAAATAGATTGCTAGATTGGGTTCCAAAGCTACAAAATCTTGTAAAGTTGTACTTGCAATCCAAGTTGACTGATGATGAATCACTACAAAATATGTCAAGCTTGCTGTACTTGCATTTCTCATGTCGTTTACATTCATATGAAGGTGAAACTTTGTATTTTCATGATGGGGGGTTTCAGAAACTAAAGGAACTACACATTGCACACTTGCCTAAATTGAGTTCCATCCTTATTGATAGAGGAGCACTGCCTTCTCTAAAAATGCTTGAGTTAACGTCTCTCCCCGAACTTCAGAAGATACCCTCTGTCATCCAGCACTTGGACAAACTTGAAGTTCTCCAACTTAATTATATGAATGTTTACCCGAGCTCTTTTCCAAGTGGAGGACCAGGCATCGCCATGAAGCAGGTGGTCCAAGTAAAAATTCGCAGTTATGATCGCTCACGTGGATCCTATACCGAGGTCATTCCTTACTCAAGGAGTTAA 2763 0.3967 MAEMAVSFAVDHLLPLLTDEATLLRGLHRGFGDIKDELESIQAFLKDADRRAAADEGSEGVKTWVKQVRQVAFQIEDIIDDYLIHLGQQQHQQQEHQHGCAAPLHNIAELIITLKRRHQIASEIQEIKSCVREIKDRSDRYGFQRQQQVSSSRENAKWYDPRTAALYIDEAEVLGFEVPKDELIGWLLKGRAERAVISVVGMGGQGKTTLAKKDFDNHKVIAHFDCHAWITVSQSYTVEGLLRDMLHKFCGDPPQGILQMDRDSLINAVRDYLQQKRYVVVFDDVWNKHFWDEIQFAVIDNKNGSRIVITTRKMEVIMSCKKSSLVQVHELQPLTQEQSLELFYKKAFRFDFDGCCPEELTEISSKIVKKCNGLPLAIVTIGGFLSTKEKNPFEWTRFSQNLSSELDKDSHLIGITKILGFSYDDLPYYLKSCFLYFGVYPEDYEVKSERLIRQWIAEGFVKEEKGKTLAEVAQGYLTELIHRSLVQVSSVSIDGKAEGCRVHDLIREMILKKLEDLSFCKFIGEDDQSRSALSGISRRLSIATTSNDLIGNIRSSHIRSLLFFTNEELPEYLVREIPTKYKLKVLDFQLNKLTCVPKDLGNLIHLKYLSLRTTGIWSLPKCIGKLQHLETLDLRGTSVRDIPKEVSKLRKLQHLLGDSMCLVQLKDGIGGMTSLQTLKKVYIDEDGGVDLIRELGKLRLLRELSLTNVRGEHGSTLSSSINVMEHLEKLHIHTTISEEIDLHLISPPQKFQDLYLCGKINRLLDWVPKLQNLVKLYLQSKLTDDESLQNMSSLLYLHFSCRLHSYEGETLYFHDGGFQKLKELHIAHLPKLSSILIDRGALPSLKMLELTSLPELQKIPSVIQHLDKLEVLQLNYMNVYPSSFPSGGPGIAMKQVVQVKIRSYDRSRGSYTEVIPYSRS* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1296 920 PANTHER DISEASE RESISTANCE PROTEIN RP 30 866 IPR044974 GO:0006952
Lja6g1296 920 SUPERFAMILY L domain-like 501 879 - -
Lja6g1296 920 Pfam Rx N-terminal domain 5 95 IPR041118 -
Lja6g1296 920 Gene3D - 333 422 IPR042197 -
Lja6g1296 920 CDD RX-CC_like 2 136 IPR038005 -
Lja6g1296 920 PRINTS Disease resistance protein signature 196 211 - -
Lja6g1296 920 PRINTS Disease resistance protein signature 371 385 - -
Lja6g1296 920 PRINTS Disease resistance protein signature 272 286 - -
Lja6g1296 920 PRINTS Disease resistance protein signature 624 640 - -
Lja6g1296 920 PANTHER - 30 866 - -
Lja6g1296 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 437 IPR027417 -
Lja6g1296 920 Pfam NB-ARC domain 179 425 IPR002182 GO:0043531
Lja6g1296 920 Gene3D Ribonuclease Inhibitor 548 899 IPR032675 -
Lja6g1296 920 Gene3D - 423 513 IPR036388 -
Lja6g1296 920 Gene3D - 4 121 - -
Lja6g1296 920 Gene3D - 164 329 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1296 Lja-Chr6 37747579 37750818 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1296 197 392 WRKY Transcription Factor Family AT5G45050 29.949 3.12e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1296 K13457 - gmx:100819372 938.717