Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1295 ATGAACCTTGGTTGGGAAGAAGCACTGAGGAAGTTTCAGAATGTTATGGCCTCAGGGACCAAGCCTTTGAAATTGAATGCTATTGCCCAGCTGGCTCGTTTCTCTGAGCATGTCCCTAAACATGTATTATCTCGTGTCATACCTATTCTCACTGAGATTCTCGCTCAAAGTATTCCAAATGATCCTTCTCCATCACTTCAAGAGGTTGATGCTTATTGCTTGATGTGCATTTCTTACCGAGGTGATGGTGCTGCGTTGGTAATTGCAATGGGTACACAGGGTGTTACACATTCTTTGATAAAGTTATTGCCTCATTCTAAGGGAGAGATGCGGGAAGTTTTGATTAAATTGTTGCTGGTTCTTGTCACTTTCAGTAGTGAAAGTAGGAAAACAATTTTTCCAGGGAGCGGATTTCGAGTCATCATGAACTTGTTGAATTCTCATAACAATGATAATATTAGGTTGTATCTGTTAGAGATTTTGAGGATCTTCGGATTGCAGAAGGATGTCAGGAATGAACTCATTAGATTAGGAGCTCTACATCTTATTGTGGAGGCGGCTGGTACTGGAATTATGGTCTCTAGGGAAAGAACATCTCAATCAATTGAATTGTTTGGTGGAGTCCCAAGCGAGAATGAGCATGAGCTTGTTGAATTAGGAGCAGTGCCGATGCTTGTGGATTTGTTGCGTGATGGAGATCAAACCACGAAACTTACAGCTGCCAAATATCTTCGCAGGTTATCTGTTCATGTTGATGGTAACACTAGACCATTTACTCAAGCTGGGGCTATCCCTCTTTTTGTTGAGCTCCTTCAAGGACCTGATCCTTATGGTAAGGGGATAGCTGAGGATGTGCTTTCTGAATTGGCTGTTAGGGAGCATAGTGCTGTTGAAATTGTAGGGCACTTGGTGAGAATTCTTAGAGAAGGTGATCATGAATCAAAAGTATATGCGACAAATGTAAAGTGGGATCTATCCATTTACCCGATCTCATCATCTGTGATCCGTGATTCAGGCGCAATCCCAGTCCTTGTTGTGCTTTTAAGGAGTGGAACTGAGAAGGTAATGGAGAATGTTTCTAGGGTATTTGCCGAGCTAAGCTATGATGCAGAAAATAGAGTGGCCCTTGCTAAGGCAGGTGCAATCCCAATTCTCATGGTCTTGCTTCATCAGAGGAACGAGGAAGTGAGGGATAATGCTGCAGAGGCTGTTTTCAATTTTTACGAAGATGCATTACATCATCATCAATTTTTACGAAGATGCATTACATCATAA 1275 0.4204 MNLGWEEALRKFQNVMASGTKPLKLNAIAQLARFSEHVPKHVLSRVIPILTEILAQSIPNDPSPSLQEVDAYCLMCISYRGDGAALVIAMGTQGVTHSLIKLLPHSKGEMREVLIKLLLVLVTFSSESRKTIFPGSGFRVIMNLLNSHNNDNIRLYLLEILRIFGLQKDVRNELIRLGALHLIVEAAGTGIMVSRERTSQSIELFGGVPSENEHELVELGAVPMLVDLLRDGDQTTKLTAAKYLRRLSVHVDGNTRPFTQAGAIPLFVELLQGPDPYGKGIAEDVLSELAVREHSAVEIVGHLVRILREGDHESKVYATNVKWDLSIYPISSSVIRDSGAIPVLVVLLRSGTEKVMENVSRVFAELSYDAENRVALAKAGAIPILMVLLHQRNEEVRDNAAEAVFNFYEDALHHHQFLRRCITS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1295 424 Pfam Armadillo/beta-catenin-like repeat 370 406 IPR000225 GO:0005515
Lja6g1295 424 Pfam Armadillo/beta-catenin-like repeat 210 248 IPR000225 GO:0005515
Lja6g1295 424 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 220 262 IPR000225 GO:0005515
Lja6g1295 424 PANTHER U BOX DOMAIN-CONTAINING 1 416 - -
Lja6g1295 424 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 339 381 IPR000225 GO:0005515
Lja6g1295 424 Gene3D - 18 201 IPR011989 -
Lja6g1295 424 SUPERFAMILY ARM repeat 6 409 IPR016024 -
Lja6g1295 424 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 1 416 - -
Lja6g1295 424 Gene3D - 202 422 IPR011989 -
Lja6g1295 424 SMART arm_5 209 249 IPR000225 GO:0005515
Lja6g1295 424 SMART arm_5 369 409 IPR000225 GO:0005515
Lja6g1295 424 SMART arm_5 250 291 IPR000225 GO:0005515
Lja6g1295 424 SMART arm_5 328 368 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1295 Lja-Chr6 37708909 37710183 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1295 225 407 U-box Gene Family AT3G54850 30.601 9.35e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1295 - - lja:Lj0g3v0252669.1 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1295 6 37708909 37710183 Lja6g1295 6 37708909 37710183 ECH