Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1294 ATGGCTTCTATTTACTTGGAGGAAGCTGAAGTTGTGGGCTCTGAAGCTCCAAGAGATAAACTGATTGGTTGGTTGGTAAGAGGAAGAGAAGAACGTACTGTTATCTCTGTGGTAGGAATGGGAGGACTGGGGAAAACAACTCTTGCTAGAAAAGTTTTTGATGGCCACCAGGTGATTGCTCACTTTGATTGCCATGCATGGATCACAGTGTCACAGTCCTACACTATAGGAGGATTGTTAAGAGAAATGCTGCAGAAATTTTGCAAAGAAAAGAAGGAGACTCCTCCGAATGATATTTCTACAATGGATCCGGATTCATTGATTGATGCAGTGAAAAAATTCTTGCAGCAAAAGAGGTATGTTGTTGTGTTTGATGATGTGTGGAACAAACATTTTTGGGATGAGATTCAATTTGCTGTGAATGATGAAAAAAATGGAAGTAGAATATTCATCACTACGAGGAAGATGGAGGTAGTTATGTCTTGTAAGAAATCTTCTCTCGTTGAAGTGCATGAGTTGCAGCCTTTAACTCCGGAACAATCCTTGGACTTGTTCTATAAGAAGGCGTTCCGATTTGACTTTGATGGATGTTGTCCCGAGGAGCTTACTCAAATATCTTCTGAAATAGTTAAAAAATGCAACGGATTACCACTAGCCATTGTGGCCATAGGTGGTTTTTTATCTACAAAAGAGAAACTTTCAGAGCTAAAGAAGGATTCCCATTTGATAGGTATAACAAAAATTTTGGGTTTCAGTTATGATGACTTGCCTTACTATCTAAAATCATGCTTCCTCTACTTTGGAATATATCCTGAAGATTATGAAGTTGGATCAGAGAGACTAATTCGACAGTGGATAGCTGAAGGGTTTGTCAAAGAGGAAAAGGGAAAAACTTTAAATGAAGTTGCACAAGGATATTTAACTGAATTGATCCACAGAAGTTTGGTGCAAGTATCTTCAATTAGCTTTGATGGCAAGGCTCAAGGTTGTCGTGTCCACGACCTCATACGTGAGATGATCCTTAAAATTTGTGAGGATTTATGTTTTTCCAAGTTCATTAGTGAAGATAATCAGTTACCATTCGCCTTAACTGGGATCAGTCGGCGCCTCTCAATTGCAGCCACTTCCAATGATTTAAAGGCAAATATTGGAAGCTCTCACGTTCGATCATTGTTTTTCTTCAAAGAGGAAGAATTACCTGAATACCTTGTGAGCAGAATCCCTACAAAATACAAACTGAAGGTACTTGATTTTGAAAAGACTAATTTGAGTTATGTTCCTGAGAGTTTGGGGAACTTGATCCACTTAAAGTATTTGAGCTTCAGGTGTACAAACATACAAAGTCTTCCAAAATCCATTGGTAAGCTCCAGAACCTGGAGACCCTGGGCCTGGATCTAAGGGAAACACTGGTGAAAGTGATGCCAAAGGAGATTAGCAAGCTTATAAAGCTTCAACATCTTCTCGGTGATGAGATGTGTTTGAATCAACTAAAGGACAGTGTTGGAGGCATGACATCCTTACAGACGCTAAATGAAATGGAAACAGATGAAGATGGAGGAGTAGAGCTAATTAGAGAGATGGGAAAGCTAAGGCTGTTAAGGGAATTGAGCTTGACTAAAGTTAGTGGAGAACATGGAAGAACTCTATATTCCTCAATAAAAGCCATGGAGCACTTGGAGAAATTAAGTATTGTTGCAGCAAGAGGCAAAGTCATTGATGAGCATTTTATTTCACCCCCACCTTTGCTTCGGGATCTTTTCCTATGTGGGGAAGATAAAGAAATTGCTAGATTGGGTTCCAATGCTCCAAAATCTTGA 1818 0.3938 MASIYLEEAEVVGSEAPRDKLIGWLVRGREERTVISVVGMGGLGKTTLARKVFDGHQVIAHFDCHAWITVSQSYTIGGLLREMLQKFCKEKKETPPNDISTMDPDSLIDAVKKFLQQKRYVVVFDDVWNKHFWDEIQFAVNDEKNGSRIFITTRKMEVVMSCKKSSLVEVHELQPLTPEQSLDLFYKKAFRFDFDGCCPEELTQISSEIVKKCNGLPLAIVAIGGFLSTKEKLSELKKDSHLIGITKILGFSYDDLPYYLKSCFLYFGIYPEDYEVGSERLIRQWIAEGFVKEEKGKTLNEVAQGYLTELIHRSLVQVSSISFDGKAQGCRVHDLIREMILKICEDLCFSKFISEDNQLPFALTGISRRLSIAATSNDLKANIGSSHVRSLFFFKEEELPEYLVSRIPTKYKLKVLDFEKTNLSYVPESLGNLIHLKYLSFRCTNIQSLPKSIGKLQNLETLGLDLRETLVKVMPKEISKLIKLQHLLGDEMCLNQLKDSVGGMTSLQTLNEMETDEDGGVELIREMGKLRLLRELSLTKVSGEHGRTLYSSIKAMEHLEKLSIVAARGKVIDEHFISPPPLLRDLFLCGEDKEIARLGSNAPKS* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1294 605 Gene3D - 4 170 IPR027417 -
Lja6g1294 605 Gene3D Ribonuclease Inhibitor 382 600 IPR032675 -
Lja6g1294 605 PRINTS Disease resistance protein signature 114 128 - -
Lja6g1294 605 PRINTS Disease resistance protein signature 213 227 - -
Lja6g1294 605 PRINTS Disease resistance protein signature 454 470 - -
Lja6g1294 605 PRINTS Disease resistance protein signature 34 49 - -
Lja6g1294 605 Pfam NB-ARC domain 16 241 IPR002182 GO:0043531
Lja6g1294 605 Gene3D - 176 252 IPR042197 -
Lja6g1294 605 Gene3D - 253 343 IPR036388 -
Lja6g1294 605 PANTHER - 10 588 - -
Lja6g1294 605 SUPERFAMILY L domain-like 331 590 - -
Lja6g1294 605 PANTHER DISEASE RESISTANCE PROTEIN RP 10 588 IPR044974 GO:0006952
Lja6g1294 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 267 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1294 Lja-Chr6 37703136 37704988 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1294 35 270 WRKY Transcription Factor Family AT5G45050 27.160 6.57e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1294 K13457 - gmx:100819372 659.062