Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1291 ATGGACCTTGGTTGGGAAGAAGCACTAAGGAAGTTTCAGAATGTTATGGTCTTAGGGACCAAGCCTTTGAAAATGGAAGCCATGGACAAGTTGTCCCGTTTCTCTGAGCATGTCCCTAAGCATGTATTATCTCCTGCCATACCTATTCTCACGGAGATTCTTGCTAAAAGTATTCCAAATGATCCTTCTCCTTCACTTCAAGAGGCTGCTGCTTACTGCTTGATGTGCATTTCTTGCCGAGGTGATGGTGTCGCGTTGGCAATTGAAATGGGTACACATGGTGTTACACATTCTTTGATAAGGTTATTGCCTCATTCTAAGGGAACGATGCAGGAAGTTTTGATTAAATTGTTGCTAGTTCTTGTCAATTTCAGTAATGAAAGTAGGATAACAGTTTGTTCCGGGGGCGGATTTCGAGTCATTATGAACTTGTTGAATTCTCATAACAATGATAATATTAGGTTGTATCTGTTAGAGATTTTGAGTATGTTAGGATTGCAGAAGTATGTCAGGAATGAACTCATGAGATTAGGAGCTCTTCATCTTATTGTCGAGGCTGCTGGTACTGGCAGCATGATCTCTAGGGAAAGAGCATGCCAATCAATTGAATTGCTTGGTGGAGTCCCGGGTGAGACTGAGCATGAGCTTCTTGAATTAGGAGCGGTTCCGGTGCTTGTGCAGTTGTTGCGTGATGGAGATAAAATCACTAAACTCATAGCTGCCAAATCTCTTCGTAGGTTATCCGTTCATGTTGATGGTAACACTAGACCATTTACTCAAGCTGGGGCTATCCCTCTTTTTGTTGAGCTCCTTCAAGGACCTGATCCTTATGGTAAGGGGATAGCTGAGGATGTACTTTCTGAATTGGCTGTTAGAGAGCATTGTGCTATTGAGATTGTTGGGCACTTGGTGAGAATTCTTAGAGAAGGTGATCATGAATCTAAAGTATCTGCGACCAATGTGATGTGGGATCTATCTGGTTGCCGAATCTCATCACCTGTGATCCGGGATTCGGGCGCAATCCCAGTCCTTGTTGTGCTTTTAAGGAGTGGAACTGAGACGGTAATGGAGAATGTTTCTAGGGTATTTGCTGAGCTAAGCTATGATGGAGCAGATAGATTGGCCCTAGCTAAGGCTGGCGCAATTCCAATTCTCATGGTCTTACTTCATCAAGGGAACGAGGAACTGAGGGATAATGCTGCAGAGGCTATTTTCAATTTTTATGAAGATCCATTATATCATCATAGAGTATCTCATGCAATATATGTTCCTTCGTTCAGATATATTCGGGATAGACTAATTCGCACCCGCACATCAAATGGGCATATGACAAGTTCTTCGCGAAGAATGAGTGTCGAGCATCTCATTGGGAACCTGCAGGATTTCCTGTAA 1392 0.4296 MDLGWEEALRKFQNVMVLGTKPLKMEAMDKLSRFSEHVPKHVLSPAIPILTEILAKSIPNDPSPSLQEAAAYCLMCISCRGDGVALAIEMGTHGVTHSLIRLLPHSKGTMQEVLIKLLLVLVNFSNESRITVCSGGGFRVIMNLLNSHNNDNIRLYLLEILSMLGLQKYVRNELMRLGALHLIVEAAGTGSMISRERACQSIELLGGVPGETEHELLELGAVPVLVQLLRDGDKITKLIAAKSLRRLSVHVDGNTRPFTQAGAIPLFVELLQGPDPYGKGIAEDVLSELAVREHCAIEIVGHLVRILREGDHESKVSATNVMWDLSGCRISSPVIRDSGAIPVLVVLLRSGTETVMENVSRVFAELSYDGADRLALAKAGAIPILMVLLHQGNEELRDNAAEAIFNFYEDPLYHHRVSHAIYVPSFRYIRDRLIRTRTSNGHMTSSSRRMSVEHLIGNLQDFL* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1291 463 Pfam Armadillo/beta-catenin-like repeat 373 406 IPR000225 GO:0005515
Lja6g1291 463 Gene3D - 213 424 IPR011989 -
Lja6g1291 463 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 2 457 - -
Lja6g1291 463 SUPERFAMILY ARM repeat 25 325 IPR016024 -
Lja6g1291 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 339 381 IPR000225 GO:0005515
Lja6g1291 463 Gene3D - 24 212 IPR011989 -
Lja6g1291 463 PANTHER U BOX DOMAIN-CONTAINING 2 457 - -
Lja6g1291 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 220 262 IPR000225 GO:0005515
Lja6g1291 463 SMART arm_5 125 166 IPR000225 GO:0005515
Lja6g1291 463 SMART arm_5 328 368 IPR000225 GO:0005515
Lja6g1291 463 SMART arm_5 250 291 IPR000225 GO:0005515
Lja6g1291 463 SMART arm_5 35 79 IPR000225 GO:0005515
Lja6g1291 463 SMART arm_5 209 249 IPR000225 GO:0005515
Lja6g1291 463 SMART arm_5 369 409 IPR000225 GO:0005515
Lja6g1291 463 SUPERFAMILY ARM repeat 298 408 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1291 Lja-Chr6 37681929 37683320 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1291 240 456 U-box Gene Family AT2G28830 24.444 1.02e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1291 - - lja:Lj0g3v0252669.1 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1291 6 37681929 37683320 Lja6g1291 6 37681929 37683320 ECH