Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1289 ATGTCTAAACTTGCCTCTCTTGAAGAGTCTCTTTTGAATGGTGACTCTAGTGTAAGCAACAATTCTAATCCCAAAAAGACCAGAGAAAATGAAAATTTGACAAGTTATTCAAAGGCTGGGTTTTTCAGCATTCTTACTTTCTCATGGATCACTCCACTAATAACACTGGGATATAAGAAGACTTTAGAACATGAGGATCTCCCACTGCTTGCTAACACTGACAGTGCCTATGGGACTTTTCCAACTTTCAGAAACAAGCTTGAGTCAGAGTGTGGTAGTGCTAGTAGAGTCACCGCTCTTAAGCTTGCTAAAGTGTTAATCTTCTCAACATGGCAAGGGATTCTTGTATCAGGCTTGTTTGCATTCTTGTTCACATGTGCTTCTTATGTTGGACCCTACCTTATTGAAAACCTAGTTCAGTATCTCAATGGGGAAAACAAGTCTAAAAATGAAGGCTATGTTTTGGTTATGGTATTTGTTGCAGCAAAGCTTGTGGAGTGCCTTTCGCAGCGGCAATGGATGCTTAGGTTCCAGCAGGTTGGGGTTAGGATGCAATCAATGTTGGTGGCAATGATCTATGCAAAAGGTTTGACCCTTTCATCTCAATCGAAAGAGGGTAACAGCAGTGGGGAAATCATCAATTTATTGACTGTTGATGCAGCAAGGATTGGTGAATTTTGTTGGTACATGCATGATCCATGGATGTGTGTTCTGCAAGTTGGTTTGGCATTGTTGATTCTTTGTAGAAGTGTAGGCGTCGCTTCTGTTGCCGCTTTTGCTGCCACAGTAATTGTGATGCTGCTAAACCTTCCTGTGGCATCATTGCAAGAGAAGTTCCAAGGTAAGGTGATGGAGTTCAAGGATAAAAGAATGAAGGCTACATCTGAGATTCTATCAAATATGAGGATCCTGAAACTGCAAGCATGGGAAATGAAGTTCTTATCGAAGATTTTTCACCTTAGGAAGACAGAGGAGCTATGGCTAAAGAAATTTCTTCTTGGCACAGCAGTTATTAGATTTCTCTTCTTTAACGCGCCTACTTTTGTTGCTGTGGTTACTTTTGGGGCTTGTGTTCTTATAGGCATCCCACTTGAATCAGGGAAGGTCTTATCTGCTCTTGCAACATTCAGAATTCTTCAAATGCCAATCTATAGTCTTCCTGACACAATTTCAATGATTGCACAAACTAAGGTTTCCCTTGATAGGATTGCATCGTATCTTCGCCTAGATGAGTTACAGAATGATGTGGTTGAGAAGCTTCCAAGAGGTAGTTCTGATGTAGCAGTTGAATTTGTAGATGGAAATTTCTCTTGGGATTTATCTTCTGTTAATCCAACATTGAAAGACATAAATCTTAGAGTTTTTCATGGTATGAAGGTTGCTGTTTGCGGCACTGTCGGATCAGGCAAGTCTACTTTACTTTCATGTATATTGGGTGAAGTACCAAAGCTATCAGGAACCCTGAAGGTGAGTGGAACAAAGGCCTACGTTGCTCAGTCACCATGGATTCAGAGTGGCAAGATAGAAGAGAACATACTATTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAAGGTTCTAGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTTGGTGATCACACCATTATTGGGGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTGCAAATAGCCCGTGCTCTCTACCAAGATTCTGACATGTATCTGCTTGATGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCGCATCTCTTCAAGGAGTGTTTGCTTGGGCTTTTGAAAACAAAAACTGTGATATACGTAACTCATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGAAGGAAGGATAGCACAATCAGGAAAATACAATGATATTCTCCAGTCAGGCACTGATTTTATGGACCTTGTGGGTGCACATAGAACAGCTTTGTCTTCAATTAAGTCCTTAGAGAGAAGGGACACATTTAAAACATCAAGTATCACCATGCAAGATGCAGATCCATTAAGTGGTTTTGAACTTGAGCAGACAGTGGAAAACAAAGATGGTCAAAATGGCAATTCAGATGATACAGTTGAGCCAAAAGGGCAACTTGTTCAAGAAGAAGAAAGGGAAAAGGGTAGAGTTGGGTTTCAAGTCTACTGGAAATACATCACAATAGCTTATGGAGGAGCTCTTGTACCCTTCATATTACTATCACAGACGCTAACAGTAGTTTTTCAGATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACCGCAGAACCCGATATTGAAAGCTTTAAACTCATGGTTGTCTATGTTGTTTTGGCAATTGGAAGTTCCTTCGGCACCCTTGCCCGTGCAGTTCTTGCTGTGATAGCTGGATACAAGACAGCCACCATGCTCTTCAATAAAATGCATTTATGCTTTTTCCAAGCACCAATGTCATTTTTTGATTCCACCCCAAGTGGGCGAATCCTTAATAGAGCTTCCACAGACCAAAGTGCAATAGATATGACTATTCCAAATCTTTTATGGGGAATTACCTTCAATCTGATTCAGATCTTTGGAAACATTTTTGTGATGTCTCAAGCTGCATGGCAGGTGTTCATAATATTGATTCCTGTGATGGCAGCTTGCATATGGTACCAGCAATACTACTCAGCATCAGCACGGGAATTGGCACGATTAGTCGGTACATGCCAAGCTCCGGTTATACAACATTTCTCTGAAACGATTTCTGGGTCAACAACCATAAGAAGTTTTGAACAAGAATCAATATTTAATGACACGAATATGAAATTGATAGACAAGTATTCCCAACCCAAATTATACAGTGCTATTGCAATGGAATGGCTGAGTTTCAGGTTGGATCTTCTATCCTGTACCGTATTTGCCTTCTGTTTGGTGTTCTTGATATCTTTTCCAAGTTCAATTACTGATCCTGGCATTGCGGGATTGGCAGTGACATATGGGCTTAATCTAAATTCTATACAATTTAATATGATCTGGTTTCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCGTCCCAGGTGAAGCTCCTCTTGTAATCAAAGACAACCAACCAGATCATTCTTGGCCGTCATTTGGAGAGGTTCATATCCAGGATTTACAGGTTCGGTATGCTCCTCACCTGCCTCTTGTTTTACGGGGTCTTACTTGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTGGTGCAAACACTTTTCCGACTTGTTGAACCTGTTGCTGGAAAAATCTTGATAGATAACATTAACATATCTTTGATTGGACTTCATGATTTACGGTCCAAACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACTGTAAGAAACAACCTGGACCCTTTGGAAGAGTACACAGATGAACAAGTTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAATAAGGAAGAAAGAAGGGAAGCTTGACTCCTTAGTTACTGAGAATGGAGGAAATTGGAGTATGGGTCAGAGGCAATTGGTCTGCCTTGGCCGGGTTCTTCTTAAGAAAAGTAAGATTTTGGTGCTTGATGAAGCAACTGCATCAGTTGACACAGTCACAGATAATATTATTCAGCAAACAGTTAAGCAGCATTTTTCAGAATGCACAGTCATTACAATTGCTCATAGAATAACTTCAATCCTAGACAGTGACATGGTTCTGTTTCTAAATGGAGGGCTAATTGAGGAATATGATTCACCAAAGAAACTGCTTAAGAACAAGTCTTCAGGTCTTGCTCAACTGGTTGCAGAATACACAAGGAGGTCAAACTCTGGTTTTGGAAGTTGA 3918 0.4061 MSKLASLEESLLNGDSSVSNNSNPKKTRENENLTSYSKAGFFSILTFSWITPLITLGYKKTLEHEDLPLLANTDSAYGTFPTFRNKLESECGSASRVTALKLAKVLIFSTWQGILVSGLFAFLFTCASYVGPYLIENLVQYLNGENKSKNEGYVLVMVFVAAKLVECLSQRQWMLRFQQVGVRMQSMLVAMIYAKGLTLSSQSKEGNSSGEIINLLTVDAARIGEFCWYMHDPWMCVLQVGLALLILCRSVGVASVAAFAATVIVMLLNLPVASLQEKFQGKVMEFKDKRMKATSEILSNMRILKLQAWEMKFLSKIFHLRKTEELWLKKFLLGTAVIRFLFFNAPTFVAVVTFGACVLIGIPLESGKVLSALATFRILQMPIYSLPDTISMIAQTKVSLDRIASYLRLDELQNDVVEKLPRGSSDVAVEFVDGNFSWDLSSVNPTLKDINLRVFHGMKVAVCGTVGSGKSTLLSCILGEVPKLSGTLKVSGTKAYVAQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLTKDLEVLPFGDHTIIGEKGINLSGGQKQRVQIARALYQDSDMYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYVTHQVEFLPDADLILVMREGRIAQSGKYNDILQSGTDFMDLVGAHRTALSSIKSLERRDTFKTSSITMQDADPLSGFELEQTVENKDGQNGNSDDTVEPKGQLVQEEEREKGRVGFQVYWKYITIAYGGALVPFILLSQTLTVVFQIASNYWMALATPVSATAEPDIESFKLMVVYVVLAIGSSFGTLARAVLAVIAGYKTATMLFNKMHLCFFQAPMSFFDSTPSGRILNRASTDQSAIDMTIPNLLWGITFNLIQIFGNIFVMSQAAWQVFIILIPVMAACIWYQQYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESIFNDTNMKLIDKYSQPKLYSAIAMEWLSFRLDLLSCTVFAFCLVFLISFPSSITDPGIAGLAVTYGLNLNSIQFNMIWFLCNLENKIISVERILQYTSVPGEAPLVIKDNQPDHSWPSFGEVHIQDLQVRYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRLVEPVAGKILIDNINISLIGLHDLRSKLSIIPQDPTMFEGTVRNNLDPLEEYTDEQVWEALDMCQLGDEIRKKEGKLDSLVTENGGNWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTVTDNIIQQTVKQHFSECTVITIAHRITSILDSDMVLFLNGGLIEEYDSPKKLLKNKSSGLAQLVAEYTRRSNSGFGS* 1306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1289 1305 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Lja6g1289 1305 CDD ABCC_MRP_domain1 429 629 - -
Lja6g1289 1305 Gene3D ABC transporter type 1, transmembrane domain 704 1039 IPR036640 GO:0005524|GO:0016021
Lja6g1289 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1050 1284 IPR027417 -
Lja6g1289 1305 MobiDBLite consensus disorder prediction 692 716 - -
Lja6g1289 1305 Pfam ABC transporter transmembrane region 742 984 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g1289 1305 Pfam ABC transporter transmembrane region 115 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g1289 1305 SUPERFAMILY ABC transporter transmembrane region 740 1041 IPR036640 GO:0005524|GO:0016021
Lja6g1289 1305 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 5 1304 - -
Lja6g1289 1305 Gene3D ABC transporter type 1, transmembrane domain 106 406 IPR036640 GO:0005524|GO:0016021
Lja6g1289 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 651 IPR027417 -
Lja6g1289 1305 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 5 1304 - -
Lja6g1289 1305 SUPERFAMILY ABC transporter transmembrane region 111 408 IPR036640 GO:0005524|GO:0016021
Lja6g1289 1305 MobiDBLite consensus disorder prediction 1 31 - -
Lja6g1289 1305 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524
Lja6g1289 1305 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Lja6g1289 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g1289 1305 SMART AAA_5 1085 1270 IPR003593 -
Lja6g1289 1305 SMART AAA_5 456 637 IPR003593 -
Lja6g1289 1305 Pfam ABC transporter 1077 1224 IPR003439 GO:0005524
Lja6g1289 1305 Gene3D - 407 674 IPR027417 -
Lja6g1289 1305 Gene3D - 1042 1294 IPR027417 -
Lja6g1289 1305 CDD ABC_6TM_ABCC_D2 740 1034 IPR044726 GO:0140359
Lja6g1289 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1059 1293 IPR003439 GO:0005524
Lja6g1289 1305 MobiDBLite consensus disorder prediction 6 31 - -
Lja6g1289 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 1022 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g1289 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Lja6g1289 1305 MobiDBLite consensus disorder prediction 692 707 - -
Lja6g1289 1305 CDD ABCC_MRP_domain2 1057 1277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1289 Lja-Chr6 37669272 37675422 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1289 429 675 Calmodulin-binding Proteins AT2G36910 28.839 5.90e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1289 - K05666 gmx:106794105 2142.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1289 6 37669272 37675422 Lja6g1289 6 37669272 37675422 ECH
Lja6g1284 6 37471167 37475848 Lja6g1289 6 37669272 37675422 PCT