Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja6g1284 | ATGCAGCAATACTACTCAGCATCAGCACGGGAATTGGCACGATTAGTCGGTACATGCCAAGCTCCGGTTATACAACATTTCTCTGAAACGATTTCTGGGTCAACAACCATAAGAAGTTTTGAACAAGAATCAATATTTAATGACACGAATATGAAATTGATAGACAAGTATTCCCAACCCAAATTATACAGTGCTATTGCAATGGAATGGCTGAGTTTCAGGTTGGATCTTCTATCCTGTACCGTATTTGCCTTCTGTTTGGTGTTCTTGATATCTTTTCCAAGTTCAATTACTGATCCTGGCATTGCGGGATTGGCAGTGACATATGGGCTTAATCTAAATTCTATACAATTTAATCTGATCCGGTATCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCGTCCCAGGTGAAGCTCCTCTTGTAATCAAAGACAACCAACCAGATCATTCTTGGCCGTCATTTGGAGAGGTTCATATCCAGGATTTACAGGTTCGGTATGCTCCACACCTGCCTCTTGTTTTACGGGGTCTTACTTGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTAGTGCAAACACTTTTCCGACTTGTTGAACCTGTTGCTGGAAAAATCTTGATAGATAACATTAACATATCTTTGATTGGACTTCATGATTTACGGTCCAAACTAAGCATTATTCCTCACGATCCAACAATGTTTGAAGGGACTGTAAGAAGCAACCTGGACCCTTTGGAAGAGTCCACAGATGAACAAGTTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAATAAGGAAGAAAGAAGGGAAGCTTGACTCCTTAGTTACTGATAATGGAGGAAATTGGAGTATGGGTCAAAGGCAATTGGTCTGCCTTGGCCGGGTTCTTCTTAAGAAAAGTAAGATTTTGGTGCTTGATGAAGCAACTGCACCAGTTGACACAGTCACAGATAATATTATTCAGCAAACAGTTAAGCAGCATTTTTCAGAATGCACAGTCATTACAATTGCTCATAGAATAACATCAATCCTAGACAGTGACATGGATGAGATTCAGAAAAAAACAGGCAACATAGTAATGCTAGATGAGGGTATATTCGATGTAGATGCAAACACATCTATTGATCAACTCTCAGAAGATTTGAACATCAAGATGCCTGAGGATCACCAATACGAGACAGTATCTGGCTTCGTATGTGAAAATTTTGGCTACATCCCCAAGATAGGTGAGATCATAGAAGTACCTCTTGAAAGAAAAAATGAAGACGATAACGATGCCCCCATTGCTGACCACCAGGATCAGAAAGAGACTTTCAAACTTGAGATAGAACTCTAG | 1398 | 0.4006 | MQQYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESIFNDTNMKLIDKYSQPKLYSAIAMEWLSFRLDLLSCTVFAFCLVFLISFPSSITDPGIAGLAVTYGLNLNSIQFNLIRYLCNLENKIISVERILQYTSVPGEAPLVIKDNQPDHSWPSFGEVHIQDLQVRYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRLVEPVAGKILIDNINISLIGLHDLRSKLSIIPHDPTMFEGTVRSNLDPLEESTDEQVWEALDMCQLGDEIRKKEGKLDSLVTDNGGNWSMGQRQLVCLGRVLLKKSKILVLDEATAPVDTVTDNIIQQTVKQHFSECTVITIAHRITSILDSDMDEIQKKTGNIVMLDEGIFDVDANTSIDQLSEDLNIKMPEDHQYETVSGFVCENFGYIPKIGEIIEVPLERKNEDDNDAPIADHQDQKETFKLEIEL* | 466 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja6g1284 | 465 | SUPERFAMILY | ABC transporter transmembrane region | 2 | 148 | IPR036640 | GO:0005524|GO:0016021 | |
Lja6g1284 | 465 | CDD | ABC_6TM_ABCC_D2 | 1 | 141 | IPR044726 | GO:0140359 | |
Lja6g1284 | 465 | Pfam | ABC transporter transmembrane region | 2 | 91 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lja6g1284 | 465 | Gene3D | - | 150 | 382 | IPR027417 | - | |
Lja6g1284 | 465 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 3 | 370 | - | - | |
Lja6g1284 | 465 | Gene3D | - | 383 | 443 | IPR016169 | - | |
Lja6g1284 | 465 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 157 | 369 | IPR027417 | - | |
Lja6g1284 | 465 | Gene3D | ABC transporter type 1, transmembrane domain | 1 | 146 | IPR036640 | GO:0005524|GO:0016021 | |
Lja6g1284 | 465 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 1 | 129 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lja6g1284 | 465 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 166 | 409 | IPR003439 | GO:0005524 | |
Lja6g1284 | 465 | SUPERFAMILY | FAD-binding/transporter-associated domain-like | 378 | 437 | IPR036318 | GO:0050660 | |
Lja6g1284 | 465 | Pfam | Transporter associated domain | 381 | 438 | IPR005170 | - | |
Lja6g1284 | 465 | CDD | ABCC_MRP_domain2 | 164 | 386 | - | - | |
Lja6g1284 | 465 | SMART | CorC_HlyC_2 | 380 | 465 | IPR005170 | - | |
Lja6g1284 | 465 | Pfam | ABC transporter | 184 | 331 | IPR003439 | GO:0005524 | |
Lja6g1284 | 465 | PANTHER | ABC TRANSPORTER C FAMILY PROTEIN | 3 | 370 | - | - | |
Lja6g1284 | 465 | SMART | AAA_5 | 192 | 385 | IPR003593 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja6g1284 | Lja-Chr6 | 37471167 | 37475848 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja6g1284 | 164 | 369 | Calmodulin-binding Proteins | AT2G36910 | 28.230 | 8.75e-24 | 103 |