Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1284 ATGCAGCAATACTACTCAGCATCAGCACGGGAATTGGCACGATTAGTCGGTACATGCCAAGCTCCGGTTATACAACATTTCTCTGAAACGATTTCTGGGTCAACAACCATAAGAAGTTTTGAACAAGAATCAATATTTAATGACACGAATATGAAATTGATAGACAAGTATTCCCAACCCAAATTATACAGTGCTATTGCAATGGAATGGCTGAGTTTCAGGTTGGATCTTCTATCCTGTACCGTATTTGCCTTCTGTTTGGTGTTCTTGATATCTTTTCCAAGTTCAATTACTGATCCTGGCATTGCGGGATTGGCAGTGACATATGGGCTTAATCTAAATTCTATACAATTTAATCTGATCCGGTATCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCGTCCCAGGTGAAGCTCCTCTTGTAATCAAAGACAACCAACCAGATCATTCTTGGCCGTCATTTGGAGAGGTTCATATCCAGGATTTACAGGTTCGGTATGCTCCACACCTGCCTCTTGTTTTACGGGGTCTTACTTGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTAGTGCAAACACTTTTCCGACTTGTTGAACCTGTTGCTGGAAAAATCTTGATAGATAACATTAACATATCTTTGATTGGACTTCATGATTTACGGTCCAAACTAAGCATTATTCCTCACGATCCAACAATGTTTGAAGGGACTGTAAGAAGCAACCTGGACCCTTTGGAAGAGTCCACAGATGAACAAGTTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAATAAGGAAGAAAGAAGGGAAGCTTGACTCCTTAGTTACTGATAATGGAGGAAATTGGAGTATGGGTCAAAGGCAATTGGTCTGCCTTGGCCGGGTTCTTCTTAAGAAAAGTAAGATTTTGGTGCTTGATGAAGCAACTGCACCAGTTGACACAGTCACAGATAATATTATTCAGCAAACAGTTAAGCAGCATTTTTCAGAATGCACAGTCATTACAATTGCTCATAGAATAACATCAATCCTAGACAGTGACATGGATGAGATTCAGAAAAAAACAGGCAACATAGTAATGCTAGATGAGGGTATATTCGATGTAGATGCAAACACATCTATTGATCAACTCTCAGAAGATTTGAACATCAAGATGCCTGAGGATCACCAATACGAGACAGTATCTGGCTTCGTATGTGAAAATTTTGGCTACATCCCCAAGATAGGTGAGATCATAGAAGTACCTCTTGAAAGAAAAAATGAAGACGATAACGATGCCCCCATTGCTGACCACCAGGATCAGAAAGAGACTTTCAAACTTGAGATAGAACTCTAG 1398 0.4006 MQQYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESIFNDTNMKLIDKYSQPKLYSAIAMEWLSFRLDLLSCTVFAFCLVFLISFPSSITDPGIAGLAVTYGLNLNSIQFNLIRYLCNLENKIISVERILQYTSVPGEAPLVIKDNQPDHSWPSFGEVHIQDLQVRYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRLVEPVAGKILIDNINISLIGLHDLRSKLSIIPHDPTMFEGTVRSNLDPLEESTDEQVWEALDMCQLGDEIRKKEGKLDSLVTDNGGNWSMGQRQLVCLGRVLLKKSKILVLDEATAPVDTVTDNIIQQTVKQHFSECTVITIAHRITSILDSDMDEIQKKTGNIVMLDEGIFDVDANTSIDQLSEDLNIKMPEDHQYETVSGFVCENFGYIPKIGEIIEVPLERKNEDDNDAPIADHQDQKETFKLEIEL* 466
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1284 465 SUPERFAMILY ABC transporter transmembrane region 2 148 IPR036640 GO:0005524|GO:0016021
Lja6g1284 465 CDD ABC_6TM_ABCC_D2 1 141 IPR044726 GO:0140359
Lja6g1284 465 Pfam ABC transporter transmembrane region 2 91 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g1284 465 Gene3D - 150 382 IPR027417 -
Lja6g1284 465 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 370 - -
Lja6g1284 465 Gene3D - 383 443 IPR016169 -
Lja6g1284 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 369 IPR027417 -
Lja6g1284 465 Gene3D ABC transporter type 1, transmembrane domain 1 146 IPR036640 GO:0005524|GO:0016021
Lja6g1284 465 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 129 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja6g1284 465 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 166 409 IPR003439 GO:0005524
Lja6g1284 465 SUPERFAMILY FAD-binding/transporter-associated domain-like 378 437 IPR036318 GO:0050660
Lja6g1284 465 Pfam Transporter associated domain 381 438 IPR005170 -
Lja6g1284 465 CDD ABCC_MRP_domain2 164 386 - -
Lja6g1284 465 SMART CorC_HlyC_2 380 465 IPR005170 -
Lja6g1284 465 Pfam ABC transporter 184 331 IPR003439 GO:0005524
Lja6g1284 465 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 3 370 - -
Lja6g1284 465 SMART AAA_5 192 385 IPR003593 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja6g1284 Lja-Chr6 37471167 37475848 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1284 164 369 Calmodulin-binding Proteins AT2G36910 28.230 8.75e-24 103
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1284 6 37471167 37475848 Lja6g1289 6 37669272 37675422 PCT