Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1283 ATGGACCTTGGTTGGGAAGAAGCACTGAGGAAGTTTCAGAATGTTATGGTCTTAGGGACCAAGCCTTTGAAAATGGAAGCCATGGACAAGTTGTCTCGTTTCTCTGAGCATGTCCCTAAGCATATATTATCTCCTGCCATACCTATTCTCACGGAGATTCTTGCTAAAAAGGCTGCTGCTTACTGCTTGATGTGCATTTCTTGCCGAGGTGATGGTGCCGCGTTGGCAATTGAAATGGGTACACATGGTGTTACACATTCTTTGATAAGGTTATTGCCTCATTCCAAGGGAACGATGCAGGAAGTTTTGATTAAATTGTTGCTAGTTCTTGTCAATTTCAGTAATGAAAGTAGGATAACAGTTTTTTCCGGGGGCGGATTTCGAGTCATTATGAACTTGTTGAATTCTCATAACAATGATAATATTAGGTTGTATCTGTTAGAGATTTTGAGTATGTTAGGATTGCAGAAGAATGTCAGGAATGAACTCATGAGATTAGGAGCTCTTCATCTTATTGTCGAGGCTGCTGGTACTGGCAGCATGATCTCTAGGGAAAGAGCATGCCAATCAATTGAATTGCTTGGTGGAGTCCCAGGTGAGACTGAGCATGAGCTTCTTGAATTAGGAGCGGTTCCGGTGCTTGTGCAGTTGTTGCGTGATGGAGATAAAACCACTAAACTTATAGCTGCCAAATCTCTTCGTAGGTTATCCGTTCATGTTGATGGTAAAACTAGACCATTTACTCAAGCTGGGGCTATCCCTCTTTTTGTTGAGCTCCTTCAAGGACCTGATCCTTATGGTAAGGGGATAGCTGAGGATGTACTTTCTGAATTGGCTGTTAGAGAGCATAGTGCTATTGAGATTGTTGGGCATTTGGTGAGAATTCTTAGAGAAGGTGATCATGAATCTAAAGTATCTGCGACCAATGTGATGTGGGATCTATCTGGTTGTCGAATCTCATCACCTGTGATCCGGGATTCGGGCGCAATCCCAGTCCTTGTTGTGCTTTTAAGGAGTGGAACTGAGACAGTAATGGAGAATGTTTCTAGGGTATTTGCTGAGCTAAGCTATGATGGAGCAGATAGATTGGCCCTAGCTAAGGCAGGCGCAATTCCAATTCTCATGGTCTTACTTCATCAAGGGAACGAGGAACTGAGGGATAATGCTGCAGAGGCTATTTTCAATTTTTATGAAGATCCATTATATCATCATAGAGTATCTCATGCAATATATGTTCCTTCGTTCAGATATATTCGGAATAGACTAATTCGCACCCGCACATCAAATGGGCATATGACAAGTTCTTCGCGAAGAATGAGTGTCGAGCATCTCATTGGGAACCCCTGCAGGATTTCCTGTAATCATTTGAAGTGTATGTTTTAA 1383 0.4237 MDLGWEEALRKFQNVMVLGTKPLKMEAMDKLSRFSEHVPKHILSPAIPILTEILAKKAAAYCLMCISCRGDGAALAIEMGTHGVTHSLIRLLPHSKGTMQEVLIKLLLVLVNFSNESRITVFSGGGFRVIMNLLNSHNNDNIRLYLLEILSMLGLQKNVRNELMRLGALHLIVEAAGTGSMISRERACQSIELLGGVPGETEHELLELGAVPVLVQLLRDGDKTTKLIAAKSLRRLSVHVDGKTRPFTQAGAIPLFVELLQGPDPYGKGIAEDVLSELAVREHSAIEIVGHLVRILREGDHESKVSATNVMWDLSGCRISSPVIRDSGAIPVLVVLLRSGTETVMENVSRVFAELSYDGADRLALAKAGAIPILMVLLHQGNEELRDNAAEAIFNFYEDPLYHHRVSHAIYVPSFRYIRNRLIRTRTSNGHMTSSSRRMSVEHLIGNPCRISCNHLKCMF* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1283 460 Gene3D - 25 200 IPR011989 -
Lja6g1283 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 209 251 IPR000225 GO:0005515
Lja6g1283 460 PANTHER U BOX DOMAIN-CONTAINING 2 446 - -
Lja6g1283 460 Gene3D - 201 412 IPR011989 -
Lja6g1283 460 SMART arm_5 114 155 IPR000225 GO:0005515
Lja6g1283 460 SMART arm_5 317 357 IPR000225 GO:0005515
Lja6g1283 460 SMART arm_5 239 280 IPR000225 GO:0005515
Lja6g1283 460 SMART arm_5 198 238 IPR000225 GO:0005515
Lja6g1283 460 SMART arm_5 358 398 IPR000225 GO:0005515
Lja6g1283 460 SUPERFAMILY ARM repeat 57 398 IPR016024 -
Lja6g1283 460 Pfam Armadillo/beta-catenin-like repeat 362 395 IPR000225 GO:0005515
Lja6g1283 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 370 IPR000225 GO:0005515
Lja6g1283 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 2 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1283 Lja-Chr6 37468837 37470252 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1283 109 404 U-box Gene Family AT2G28830 25.667 3.08e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1283 - - lja:Lj0g3v0252669.1 650.973