Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1271 ATGGCTACTTCAGAGGATGATGGGGGTGAACCAAAATTTCCTGAGCCACTTTTCGTAGAAGATGAAGAGGAAGAGCACGAGGATGACGAAGAGGTAGTGGAAGACAATGAATTGGGATGCAGTGGTGACGATACAGATTTAGATAGTTCAGATGATGAATTCAGGAATGTGCTTACCTTAACAGCTGATGAGATACGAGCTTTAACGTTTTGCAGTGAGTCTAATGCATACACATTTTACTGTGCCTACGCGAAGGGAAAGGGATTTGTGGTTAGAAAAGATGCATGTGAACGAGATTCTAATAACAAAGTTGTAATGCGAAAATTTGTATGCAATAGGGAGGGGTTAAGGGAACCAAAGTACTTCATTATGGATAGGCAAAGAGCCCACAGAAGCCTAACCCGCACTAACTGTCAAGCAAGACTCAGGATACGGTACGATAACAAGAAATGCCAATGGGGTGTGGTGGGGTTTGAGGAGAAACACAACCACGAACTTACCCCGTCGGTATATGTCCCTGTGATTAATGCTTACCGTACAATTAGTGAAGGAGACAAAGCTTAG 564 0.4326 MATSEDDGGEPKFPEPLFVEDEEEEHEDDEEVVEDNELGCSGDDTDLDSSDDEFRNVLTLTADEIRALTFCSESNAYTFYCAYAKGKGFVVRKDACERDSNNKVVMRKFVCNREGLREPKYFIMDRQRAHRSLTRTNCQARLRIRYDNKKCQWGVVGFEEKHNHELTPSVYVPVINAYRTISEGDKA* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1271 187 MobiDBLite consensus disorder prediction 17 48 - -
Lja6g1271 187 MobiDBLite consensus disorder prediction 1 48 - -
Lja6g1271 187 Pfam FAR1 DNA-binding domain 78 167 IPR004330 -
Lja6g1271 187 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 19 176 - -
Lja6g1271 187 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 19 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1271 Lja-Chr6 36921786 36922349 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g1271 FAR1 4.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1271 - - ccaj:109792835 154.066