Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1266 ATGACTGTAAACGATCGCTGTTTCGTGGAATGGAAAGAGCAGTTCGTTTCGCAGGAGCGTGGCAATCGTGTGGTTCACTATTACCTGAAGGATTCTGGTGGGGAATCCGTCCTTGCAGTTGTGGGCACTGAGAGGAGTGTTAGACACATGTGCTATGTTGCTGCTGAGGAGTTCCTTGAAATTTGTGGGAAGGAGGGTTGCGTTCCAGCTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTGGATTGGCTGACATCAATGCTATCAAAGCAGCTTGTGCAGGGAGAAAGAAGTGGATCGCCTGGTCATAATTTGGCTCTACCTCATGAAACCTCAAATGGCTGTGAAAATGATGGTACTGCTCTGTCTGCTCAAATAGCAGATCACAAGGACATTCTATTGAGTAACTGCAAATTGTCCACTTCAGACATTGTTTGGTCAGGAGTTGCGTGGACATGTGGAAAACAACTGAAGCATTATCCTGCCTTTTGCAGGAATGGCATCAAAATAGCGATTCAATCCTTTGTTTTTGTAATGGGAAAGGAAGAGAAACATTTTGTGGCTTATTTAGAGGATATGTATGAAGACAGGAGGGGGCAGAAAAAGGTTAAAGTCAGGTGGTTTCACCACAATCAGGAAGTCAAGGGTGCAATTCCTGTCCGGAATCCTCACCCTCGGGAAGTTTTTATCACGTCTTATTCTCAAGTCATCAGTGCAGAGTGTGTTGATGGTCTTGCCACAGTCTTAACTCGTGAACACTATGAAAGATGCATGCCCTATTTTTCTCCCACTTCAACAGACAGAATACATTTGTGCTTTAGACAATTTAAAGGCAACAAAGTTAAGCCCTTTGACCTGAGTAAACTGCGTGGCTATTATGCTCAATCAGTTCTTTCTTGCTTGCACCTTGATTCTAACCAGAAGCCAGAGAAGAGCAACAACCTTGCAAGAGAAGATGAGGATTTGGGCGTAGGTGATGATGCAAAGTTGGGAGCCAAGAGGAGCAGAAGTGATAGGGGGTCTCCTCAGTCTCGGATTGGTCGGCGGGGAGTTAGGAAGTTAATTAGAAGTGAGCAAATGATGGTACACGAGATGTTCCAGGTTGTAAATTATGGTAGCCCAGATCAGAGATTGCTTTCTCTGAAACAGATTGAATTCCAACCTTGGAATAACCCCACATACAAGGTTGATGACAAGATAGAGTTGCTCTGTCAGGATAGTGGCATCAGAGGTTGCTGGTTCAGGTGCACAGTTGTGCAGGTAGCCCGGAAACAGTTGAAAGTTCAATATGATGATGTTCAGGATGAAGATGGAAGTGGAAATCTTCAGGAGTGGATCCCTGCTTTCAAGTTGGCCAAGCCTGATAAACTTGGGATGAGACATTCTGACCGGCCCACCATCAGGCCAGCTCCAACTCATGAGGAACAAGAACTGGCTGTCGAGGTCGGAGCTGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGGGTTGTAATTAGAATTGACGACTCTAGTGGTGATAGTGTTCAAGTCTACTTTTCAGGTGAATGCTTGCTTATGAAAATGCACAAGAAGGACTTGCGAATATCTAGAGATTGGTTAGGAGACAAGTGGATTGATATTAAGGCAAAGCCTGATATAACCTCAACTATATTTACAGCTGATAGTTTTAACTCAAAGCATCCCTTGTCACAGTCTATGGTTAAGGATGGGGACTCTGTTGGTGTCGCTAATTCATGTCAAGACGTTCTTTCTAGTAAGAAGTCTAACGAACCTGATATTGCTGAAGAGAAACTTGTGTGTTGTGATGGCTTTGCTGAAGATGGGGATTGTGTCGGTGATAATAATAGAGAAAAAAATGCACAAGTTGATAATGTTGAGACGCGTAGCAGTTGTGATAATGAAGATAATGGTGATGATAATGGCAAGGGTGTCAATGATGATGGTCGTAGTAATGAGAACATTAGTGATGATAATAAGGATATGGAGGTGAGTGGTACTTCTGAACCAACTGTAGAACATCATGCATAA 2034 0.4385 MTVNDRCFVEWKEQFVSQERGNRVVHYYLKDSGGESVLAVVGTERSVRHMCYVAAEEFLEICGKEGCVPAGFKWRSRREVVDWLTSMLSKQLVQGERSGSPGHNLALPHETSNGCENDGTALSAQIADHKDILLSNCKLSTSDIVWSGVAWTCGKQLKHYPAFCRNGIKIAIQSFVFVMGKEEKHFVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDGLATVLTREHYERCMPYFSPTSTDRIHLCFRQFKGNKVKPFDLSKLRGYYAQSVLSCLHLDSNQKPEKSNNLAREDEDLGVGDDAKLGAKRSRSDRGSPQSRIGRRGVRKLIRSEQMMVHEMFQVVNYGSPDQRLLSLKQIEFQPWNNPTYKVDDKIELLCQDSGIRGCWFRCTVVQVARKQLKVQYDDVQDEDGSGNLQEWIPAFKLAKPDKLGMRHSDRPTIRPAPTHEEQELAVEVGAAVDAWWSDGWWEGVVIRIDDSSGDSVQVYFSGECLLMKMHKKDLRISRDWLGDKWIDIKAKPDITSTIFTADSFNSKHPLSQSMVKDGDSVGVANSCQDVLSSKKSNEPDIAEEKLVCCDGFAEDGDCVGDNNREKNAQVDNVETRSSCDNEDNGDDNGKGVNDDGRSNENISDDNKDMEVSGTSEPTVEHHA* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1266 677 Pfam BAH domain 170 273 IPR001025 GO:0003682
Lja6g1266 677 SMART agenet_At_2 392 457 IPR014002 -
Lja6g1266 677 SMART agenet_At_2 478 536 IPR014002 -
Lja6g1266 677 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Lja6g1266 677 MobiDBLite consensus disorder prediction 623 677 - -
Lja6g1266 677 PANTHER OS07G0607300 PROTEIN 4 666 - -
Lja6g1266 677 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 666 - -
Lja6g1266 677 Pfam Agenet domain 397 471 IPR008395 -
Lja6g1266 677 Gene3D - 137 288 IPR043151 -
Lja6g1266 677 SMART BAH_4 168 287 IPR001025 GO:0003682
Lja6g1266 677 MobiDBLite consensus disorder prediction 325 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1266 Lja-Chr6 36841189 36846219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1266 406 534 PHD Transcription Factor Family AT5G58610 28.571 1.56e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1266 - - gmx:100809407 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1266 6 36841189 36846219 Lja6g1266 6 36841189 36846219 ECH