Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1257 ATGGCCAGTAACGGTGCAAAGGAGCCATTGTTGTCATGGTCACCGGATCCTGCAGCTCAAAAGGTTACAAGGCAGTTAAGAAAAAGAAGATATCTCCGTTCAAGAACTGCTGCTCCTTTTGCTGATCTTGCTCCTCCTGAGACAAATGGAACTGGATCAATTCAACTTTCCAAGTCTATTTTTGGGAAGTTGAGTCCAAGCTTTAGACAAGTGGCCATATACTTTGCAGTGTATATAGGTGTAGGAGCTGTGATCTTCTACCTTGTGAGGAATCAGATCAAGGGGCACAAAACAGATGGTGTTCTTGATGCTTTATACTTCACAATTGTGACAATGACCACAGTTGGATATGGAGACCTTGTGCCCAATAGTACCCTCACAAAACTACTTGCCTGCGCTTTCGTTTTCACCGGAATGTCATTGGTTGGACTAATCCTAACCAAAGCAGGAGATTACTTGGTTGAGAAACAGGAAGCTTTGCTACTCAAAGCTATGACCATAGGCCAAAAAGTTGGTCCAACCGAAATTTTAAAGGAAGTTAAGAACCATAAAATCAGATTAAAATTTTTTCTGGTCTTTTTCCTTCTCCTGTTTCTCATTGCTATAGGGACAGCATTCTTGGTCAGTGTTGAAAAATTGGATGTTATTGATGCCTTCTACTGCGTTTGCTCGACTTTTACAACCCTGGGGTATGGTGACAGAAGCTTCTCAACTCAAACAGGAAGAATATTTGCAGTGTTTTGGATATTGGCAGGGACTATTTGCTTAGCTCAGCTTTTCCTCTGCATTGCTGAGATGAACACTGAGAGCAAACAGAAGGCAATTGTCAAATGGGTTCTTACACGAAAGATGACCAATTTGGATTTGGAGGCAGCAGATCTTGATGAGGATGGAAGTGTTGGGGCTGCTGAATTCATTATTTATAAGCTCAAAGAAATGGGGAAGATTAGTCAAGAAGATATTTCAGTTATTCTGCAGGAGTTTGAAGAGCTTGATGTTGATCAATCTGGTTCACTGTCAATTTCTGATTTGACACTTTCTCAGTCATCTTAG 1053 0.4112 MASNGAKEPLLSWSPDPAAQKVTRQLRKRRYLRSRTAAPFADLAPPETNGTGSIQLSKSIFGKLSPSFRQVAIYFAVYIGVGAVIFYLVRNQIKGHKTDGVLDALYFTIVTMTTVGYGDLVPNSTLTKLLACAFVFTGMSLVGLILTKAGDYLVEKQEALLLKAMTIGQKVGPTEILKEVKNHKIRLKFFLVFFLLLFLIAIGTAFLVSVEKLDVIDAFYCVCSTFTTLGYGDRSFSTQTGRIFAVFWILAGTICLAQLFLCIAEMNTESKQKAIVKWVLTRKMTNLDLEAADLDEDGSVGAAEFIIYKLKEMGKISQEDISVILQEFEELDVDQSGSLSISDLTLSQSS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1257 350 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 21 342 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja6g1257 350 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Lja6g1257 350 Gene3D - 66 160 - -
Lja6g1257 350 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 21 342 - -
Lja6g1257 350 Pfam Ion channel 195 267 IPR013099 -
Lja6g1257 350 Pfam Ion channel 74 154 IPR013099 -
Lja6g1257 350 SUPERFAMILY Voltage-gated potassium channels 63 158 - -
Lja6g1257 350 Gene3D - 170 281 - -
Lja6g1257 350 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja6g1257 350 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja6g1257 350 SUPERFAMILY Voltage-gated potassium channels 184 284 - -
Lja6g1257 350 SUPERFAMILY EF-hand 283 345 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1257 Lja-Chr6 36629873 36633024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1257 60 350 Ion Channels AT5G55630 63.918 3.42e-141 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1257 K05389 - gmx:100777388 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1257 6 36629873 36633024 Lja6g1257 6 36629873 36633024 ECH