Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1254 ATGGCGGACTCGGACAACGATTCCGGCGGGGAGCACAACGCAGGCGGATCGAACGCTCATGACAGAGAGTTATCGCTGAAGGAGCAGGACCGGTTCCTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATAAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGGAAGACGATCAACGGCGATGACCTGCTGTGGGCCATGACGACGCTTGGGTTCGAGGACTACGTGGAGCCGCTGAAGGTGTACCTGCAGCGGTTCAGGGAGATGGAGGGAGAGAAGAGCGTGGCGGCGCGTGATAGGGACGCTCCCTCTTCCAATGCTAGCAACAGTTCATTTGAGGGTGGTGGTGGTAGTTATGGTGGTGGTGGGATCATGATGCATCAGGGACACGTGTACGGTTCTTCTGGGTTTCATCAAGTGATGGGTAATAAGGGTGGGCCTGGGTATCCTGGGCCTGGATCCAATGCTGGTAGACCAAGATAG 570 0.5807 MADSDNDSGGEHNAGGSNAHDRELSLKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKSVAARDRDAPSSNASNSSFEGGGGSYGGGGIMMHQGHVYGSSGFHQVMGNKGGPGYPGPGSNAGRPR* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1254 189 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Lja6g1254 189 SUPERFAMILY Histone-fold 29 145 IPR009072 GO:0046982
Lja6g1254 189 MobiDBLite consensus disorder prediction 1 25 - -
Lja6g1254 189 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 161 - -
Lja6g1254 189 MobiDBLite consensus disorder prediction 130 144 - -
Lja6g1254 189 MobiDBLite consensus disorder prediction 164 189 - -
Lja6g1254 189 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 161 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja6g1254 189 Gene3D Histone, subunit A 19 142 IPR009072 GO:0046982
Lja6g1254 189 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Lja6g1254 189 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Lja6g1254 189 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Lja6g1254 189 MobiDBLite consensus disorder prediction 123 149 - -
Lja6g1254 189 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1254 Lja-Chr6 36592659 36594128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1254 1 157 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.605 2.16e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja6g1254 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1254 K08065 - gmx:100813580 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1254 6 36592659 36594128 Lja6g1254 6 36592659 36594128 ECH