Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1252 ATGGAGGAAGGTGAGGGTGGGGATCCAATGGATCACTTCCACCGTAACGAAGCTATCTCCGCCGTTGCTGACGACGGTTTCCTGGCCGAGGAAGACGACGATTACGAGGACCTTTACAACGATGTCAATGTTGGTGAAGGGTTCCTTCAATCCTTGCGCAAGAACGATGATTCAGCCTTCAGAAACGACGACGTTGACGACAAGCCGCCTCCAGCTCAAGCTCAAGATGCCGCTGTGGTTCCAGTACCTGGTGTCGGTGAGGGCGGCGGCGGCGGTGGGGTTGTGGAACCGAGGGTTTCTGGAGGAGTTGATGGGTTTAGAGGGAATGAGGTGGTGGGTGTCCAAGGAGGTGGCGGAGGGGGGATTAGGGTTGAATTAGGGCAGAAATCTGGGAAGTTGAGTGAGATTGAGGAGCAGAGTGGTAATGATGGTGTTGGAATCCAGGGTATTGAGCAGCAGCAGCAACCGCATGGTGGTGGTATTGTTGGGAGTGTGGGGAATGAGGGTTTACTGAGACAAGGTCAAGGTGCTGGTGGAGGTGGAGGAGGAATACTTAACAGGGCTGGTGGAAATGGGGTTGGGAATAGTGTGGGCGGTTTTAATACCGGAGTAGGTGGAGGTGGATTTGGAGGTGCTGGTGGTGGTGGCGGCGGCGGAGGAACTGTTCTATTTGTGGGTGATTTGCACTGGTGGACTACTGATGCTGAACTGGAAGCTGAGCTTTGTAAGTATGGGCAAGTGAAGGAAGTTAAGTTTTTTGATGAGAAAGCCAGTGGGAAATCAAAAGGGTATTGCCAGGTTGAGTTTTATGAACCTTCGGCTGCAGCTGCTTGTAAGGATGGGATGAACGAACATGAGTTTAATGGGAGGGCTTGTGTCGTTGCTTATGCATCCCCTTTTACTGTTAAGAAAATGGGAGAGGCTCAGATAGCTAGGAATCAACAGGGGAACGTGAACCAATCTGCAGTTCCCCAGGGAAGGAAGGGTCCTGCTGAGGCAGGAGCTAAGCCGGGTGGTAGTAATGTTGGGACAGGTAATAACTACCAAGGTGGAGATGGCAATAGAGGTTATGGAAGAGGAAACTGGGGGAGAGGGAACAATCCTGGTATGGGGAATAGAGGGCCTGTTAATCAAATGAGGAATAGGGGTGGTAGAGGTATAATGGGTAATGGTGGAAATGGGTTTGGACAGGGTATGGGTGCTAATCCCCCTCTGATGCATCATCAGTCTATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCAATTGGTAGAATGGGCAACTATGGAGGCTTTCCCGGTGCTCCGACACCTCCATTCTCGGGTATTATGCCTTCATTCCCTGGTGTTGGAGGTGTAGGTATGCCTGGAGTAGCTCCTCATGTTAATCCAGCCTTTTTTGGTAGAGGTATGCATATGAATGGTATGGGGATGATGCCCACATCAGGTATGGATGGTCCTAATATGGGAATGTGGTCAGATCCAAATATGGGTGGATGGGGTGGTGAAGAGCCTGGTGGTGGCAAGGCCGGAGAGTCAAGTTATGGGGAAGAAGCAGCATCTGACCATCAGTATGGTGAGGTGAACCACGATAGAGCTGGTTGGACTAATACTACGAGGGATAAAGATCGAGGTTCAGAAAGGGACTGGTCCGGTACTTCTGAGCGAAGGTACCGGGATGATAGAGATCAAGGATATGAAAGAGATGCACCTAGTGAAAAAGATATGGGACATGACCATGAATGGTCTGGAAGAAGGCAGCGTGATGATAGAGAAATGGGCCGAGAGCGATCTCGTGACCGTGATCGGGAACGATCTCGAGACCGTGACCGTGAAAGGGATCGCGATCGAGACCGTGAGCGTGACAGGTACAGGGAAGATAGGGGCAGGTATGCAGATCATCATAGATACAGAGATCGTGAAGCAGAGCCTGATGATGAATTGGAGAGAGGACGGTCATCAAGGACTCACAGCAAATCACGGTTATCACATGATGAGGAACACCATTCTAGGCCAAGAGATGCTGATTATGGGAAGAGAAGGCGGCTTACCTCTGAGTAA 2064 0.5068 MEEGEGGDPMDHFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSAFRNDDVDDKPPPAQAQDAAVVPVPGVGEGGGGGGVVEPRVSGGVDGFRGNEVVGVQGGGGGGIRVELGQKSGKLSEIEEQSGNDGVGIQGIEQQQQPHGGGIVGSVGNEGLLRQGQGAGGGGGGILNRAGGNGVGNSVGGFNTGVGGGGFGGAGGGGGGGGTVLFVGDLHWWTTDAELEAELCKYGQVKEVKFFDEKASGKSKGYCQVEFYEPSAAAACKDGMNEHEFNGRACVVAYASPFTVKKMGEAQIARNQQGNVNQSAVPQGRKGPAEAGAKPGGSNVGTGNNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNQMRNRGGRGIMGNGGNGFGQGMGANPPLMHHQSMMNQGFDPAFGGPIGRMGNYGGFPGAPTPPFSGIMPSFPGVGGVGMPGVAPHVNPAFFGRGMHMNGMGMMPTSGMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDHQYGEVNHDRAGWTNTTRDKDRGSERDWSGTSERRYRDDRDQGYERDAPSEKDMGHDHEWSGRRQRDDREMGRERSRDRDRERSRDRDRERDRDRDRERDRYREDRGRYADHHRYRDREAEPDDELERGRSSRTHSKSRLSHDEEHHSRPRDADYGKRRRLTSE* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1252 687 Gene3D - 217 361 IPR012677 -
Lja6g1252 687 MobiDBLite consensus disorder prediction 54 76 - -
Lja6g1252 687 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 686 IPR034772 -
Lja6g1252 687 MobiDBLite consensus disorder prediction 486 687 - -
Lja6g1252 687 MobiDBLite consensus disorder prediction 524 687 - -
Lja6g1252 687 SUPERFAMILY RNA-binding domain, RBD 220 320 IPR035979 GO:0003676
Lja6g1252 687 MobiDBLite consensus disorder prediction 56 70 - -
Lja6g1252 687 MobiDBLite consensus disorder prediction 312 378 - -
Lja6g1252 687 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 299 IPR000504 GO:0003723
Lja6g1252 687 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 292 IPR000504 GO:0003723
Lja6g1252 687 CDD RRM_CFIm68_CFIm59 227 296 - -
Lja6g1252 687 SMART rrm1_1 222 295 IPR000504 GO:0003723
Lja6g1252 687 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1252 Lja-Chr6 36569525 36574453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1252 219 297 Eukaryotic Initiation Factors Gene Family AT1G49760 34.177 2.89e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1252 K14398 - gmx:100813702 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1252 6 36569525 36574453 Lja6g1252 6 36569525 36574453 ECH