Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1248 ATGGAAAATTTTGCAAATGAGGAGGAACACATCTTTCGTAGCCAATATTCACCTGTTCCTATTCCTGACAATGTTACATTACCAGAATTTGTTGCATTTGTGGATGCTGTCACTGGAAAAGGGATCACTTATAATGAGGTGGTCAGAGACACTAAGAGGTTTTCAAAGGCATTGAGATCTCTTGGTATAAGAAAAGGGAATGTTGTGATTGTAGTACTTCCAAATATACCTGAGTATGCCATTGTTGCTTTGGGGATCATGGCTTCTGGTGGTGTCTTCTCAGGGGCAAATCCAGCATCACATACATCAGAAATTAAGAAACAGGCAGAGTCTGCTGATGCCAAATTAATTGTCACAAATAGCTCAAGCTATGATAAGGTGAAAGGCCTAGAAGTACCTGTTGTTGTGCTGGGAGACGAAGTTGTTGAAGGTGCCATGAATTGGAACAAACTGCTAGAAGCAGCAGACAGAGCAGGTGATGATATGATAAGGGAAGCTGTTAACCAGAATGATCTTTGTGCCATGCCATTCTCTTCAGGCACCACAGGGATGTCAAAGGGTGTGATGCTCACTCACAGAAACCTTGTAGCTAATCTTTGCTCCACGCTTTTCGGCGTAGCGCCGGAAATGGTGGGTAAGGTCACCATACTAGGCCTAATTCCCTTCTTTCACATCTATGGCATCACTGGCATATGCTGTGCCACTCTTAGGAACAAAGGGAAAGTTGTGGTGATGGGAAGATTTGAGCTGAAAGCATTTCTCAATGCCTTGATCACACATGAGATCACATTTGCACCCATTGTGCCTCCAATCATTCTCAGCTTGGTGAAAAATCCCATTGTAGATGAATTTGATCTCAGCAAGCTTAAACTCCAGGCTGTTATGACTGCAGCAGCACCACTTGCACCAGAACTCCTAACAAACTTTGAACACAAGTTCCCTGGTGTTCTTGTTCAAGAGGCGTATGGACTAACTGAGCATAGCTGCATCACACTCACCCATGCACAAAAAGGGTTGGGGAGTCCACATAAAAATTCAGTGGGGTTCATCCTCCCAAATTTGGAAGTCAAATTTGTTGATCCTGAAACTGGTAAATCCCTCCCAAGGAACACACCAGGGGAACTCTGTGTAAGAAGCCAATGTGTGATGCAAGGTTACTATAAACAGGTGGATGAGACTGCTCAGACCATTGACAAGAATGGATGGCTTCACACTGGTGACATAGGATTCATAGATGATGAAGAGAATGTTTTTATTGTTGATCGTATCAAGGAGTTGATTAAATACAAAGGCTTCCAAGTTGCTCCTGCAGAGTTAGAGGCTATTTTGCTGTCTCATCCCTCAATTGAAGATGCTGCTGTTGTGTCATTACCAGATGAAGAGGCAGGGGAAATCCCAGCTGCAAGTGTTGTTTTGAGCCTTGGTGCCAAAGAGAGTGAAGAGGACATTATGAACTATGTTGCCTCCAATGCTGCTAGTTACAAGAAAGTGAGAGTGGTGCACTTTGTGGAATCCATACCAAAATCACCTTCTGGGAAAATAATGAGAAGGCTTGTCAAAGAGAAGATGGTGGAAAAGATGAAGACAAATTCCACAACTAAATCCATCACTCTCTAA 1617 0.4317 MENFANEEEHIFRSQYSPVPIPDNVTLPEFVAFVDAVTGKGITYNEVVRDTKRFSKALRSLGIRKGNVVIVVLPNIPEYAIVALGIMASGGVFSGANPASHTSEIKKQAESADAKLIVTNSSSYDKVKGLEVPVVVLGDEVVEGAMNWNKLLEAADRAGDDMIREAVNQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFGVAPEMVGKVTILGLIPFFHIYGITGICCATLRNKGKVVVMGRFELKAFLNALITHEITFAPIVPPIILSLVKNPIVDEFDLSKLKLQAVMTAAAPLAPELLTNFEHKFPGVLVQEAYGLTEHSCITLTHAQKGLGSPHKNSVGFILPNLEVKFVDPETGKSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHPSIEDAAVVSLPDEEAGEIPAASVVLSLGAKESEEDIMNYVASNAASYKKVRVVHFVESIPKSPSGKIMRRLVKEKMVEKMKTNSTTKSITL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1248 538 Gene3D - 425 528 IPR045851 -
Lja6g1248 538 SUPERFAMILY Acetyl-CoA synthetase-like 27 525 - -
Lja6g1248 538 Pfam AMP-binding enzyme 28 429 IPR000873 -
Lja6g1248 538 Gene3D - 9 424 IPR042099 -
Lja6g1248 538 Pfam AMP-binding enzyme C-terminal domain 438 513 IPR025110 -
Lja6g1248 538 ProSitePatterns Putative AMP-binding domain signature. 175 186 IPR020845 -
Lja6g1248 538 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 5 526 - -
Lja6g1248 538 CDD 4CL 31 517 - -
Lja6g1248 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1248 Lja-Chr6 36516763 36519805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1248 1 524 Monolignol Biosynthesis Gene Families AT1G62940 70.446 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1248 K01904 - gmx:100811418 924.85