Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1230 ATGGAAATTGGCAGAGAGGATGAGCTTATAGACATTTCAATTTCACCCTCATCAGGTGCTTCCACAAACATAGTAAGGAACTATGGTCACAACAAGGAGTTCATGTCTCATCAAAATAGGTACTCAGAGATTGACATAGTAGTTGAAGATTCCAGTTCCAATCACAATCCACCCCTCCCCATATTTCTAAAGTTTGAAGATGTGGAGTTTAAGGTGAGAAATAGCCAAGCTGGCTCTAATAACCCTGTGAAGACCATGGTGTCAAAGGTATCCACACAACTCACTGTGGAAGATGAGAGATACAAGAGAATTTTGAAGGGCATCACAGGAAGCATTGGCCCTGGTGAAATTCTTGCTCTGATGGGTCCTTCTGGAAGTGGGAAGACGACCTTGTTGAGAGTTATAGGAGGAAGGTTGCTTGACAATGTAAAGGGGAAAATAACTTACAATGATGTTAAATTTACTGCAGCTATCAAGAGGAGGATTGGATTTGTGACACAAGAGGATGTTCTTTTCCCACAATTAACTGTGGAAGAAACACTAATCTTCTCAGCATTCCTAAGGCTGCCAAACAATATGAGCAAGCAGGAAAAATATGAGAAAGTAGATGACACTGTCAAGCAACTAGGCCTTGAAAGATGTCGCAACACGAAAATAGGTGGAGGATATCTCAAAGGCATATCAGGAGGGGAAAGGAAGAGAACCAGCATAGGCTATGAAATTCTTGTTGACCCTTCATTGTTGTTGCTTGATGAACCAACTTCAGGCCTTGATTCCACCTCAGCAAACAAACTCCTTCTCACACTTCAAGAACTTGCTAAGGATGGAAGGACCATAATCACAACAATACATCAGCCATCCAGCAGAATCTTTCACATGTTTGACAAACTTCTTCTGATATCAGAAGGCTATCCAGTTTACTATGGGAAAGCTAGAGAAACGATGGAGTACTTTTCTTCTTTGAGGTTCATACCGCAAATACCGATGAATCCAGCAGAGTTCTTGCTTGACTTGGCAACTGGTCAAGTGAATGACATAAGTGTTCCAACAGATATTTTTCAAGATCATGAATCTTCTGACACTTCAAAAAATGTTATTAAATATCTACAACTCAAGTACAAAGCTTTACTGGAGCCAAAAGAGAAAGAAAAGAACCATGGAGCACCAAACACACCAGAACACCTTCAACTAGCCATTCAGGTTAAGAAAGAGTGGACACTGAGTTGGTTTGACCAATTCATGATTCTCTCTAGGAGAACATTCAAAGCAAGATGCAAGGACTACTTTGATAAGTTAAGACTAGTTCAAGCCCTTGGACTTGCACTTCTGTTAGGCCTCCTTTGGTGGAAATCTTCAACAAACACAGAGGCTCAACTCAGAGATCAAGTTGGTCTAGTGTTTTATATCTGTATATTCTGGACATCTACATGCATTTTTGGAGCAGTTTATGTCTTTCCATTTGAAAAGTACTACTTGATAAAAGAAAGGAAAGCTGATATGTACAGATTAAGTGTCTACTATGCATGCAGCACTCTCTGTGACATGGTGGCACATGTTTTCTATCCTACATTTTTCATGATTATCTTGTACTTCATGGCTGGTTTTAAGAGGACTGTCGCTTGCTTCTTCCTCACATTGTTTACTGTTCTGCTCATAGCTATAACAAGTCAAGGAGCAGGAGAACTTTTTGGAGCTGCAGTTATGAGTATTAAAAGATCAGGGAATGCTGCTTCTTTGATACTAATGTTATTCCTTCTTACAGGTGGCTACTATGTCCAGCACATACCAAAGTTCATGAGGTGGTTGAAGTATTTGTCATTCATGTACTATGGTTTCAGGCTTCTTCTGAAGGTGCAGTATTCAGGAGACCAACTATATGATTGTGAAAGCTTGGGAGGGTGCAGGCCCCTCCAAAGTTCACCTACATTTGACACAGTGAACTTGAAAGGTGGCTTAGAAGAAGTTTGGGTTCTGCTAGCCATGGCTATATGTTTCCGCTTGTTAGCATACTTTTTCCTCCGCAAAAGAATTGATGTCCGCAACTAA 2046 0.4052 MEIGREDELIDISISPSSGASTNIVRNYGHNKEFMSHQNRYSEIDIVVEDSSSNHNPPLPIFLKFEDVEFKVRNSQAGSNNPVKTMVSKVSTQLTVEDERYKRILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLLDNVKGKITYNDVKFTAAIKRRIGFVTQEDVLFPQLTVEETLIFSAFLRLPNNMSKQEKYEKVDDTVKQLGLERCRNTKIGGGYLKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLLTLQELAKDGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKARETMEYFSSLRFIPQIPMNPAEFLLDLATGQVNDISVPTDIFQDHESSDTSKNVIKYLQLKYKALLEPKEKEKNHGAPNTPEHLQLAIQVKKEWTLSWFDQFMILSRRTFKARCKDYFDKLRLVQALGLALLLGLLWWKSSTNTEAQLRDQVGLVFYICIFWTSTCIFGAVYVFPFEKYYLIKERKADMYRLSVYYACSTLCDMVAHVFYPTFFMIILYFMAGFKRTVACFFLTLFTVLLIAITSQGAGELFGAAVMSIKRSGNAASLILMLFLLTGGYYVQHIPKFMRWLKYLSFMYYGFRLLLKVQYSGDQLYDCESLGGCRPLQSSPTFDTVNLKGGLEEVWVLLAMAICFRLLAYFFLRKRIDVRN* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1230 681 Gene3D - 87 322 IPR027417 -
Lja6g1230 681 Pfam ABC-2 type transporter 284 344 IPR043926 GO:0140359
Lja6g1230 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 677 - -
Lja6g1230 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 63 327 IPR003439 GO:0005524
Lja6g1230 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 320 IPR027417 -
Lja6g1230 681 SMART AAA_5 114 305 IPR003593 -
Lja6g1230 681 Pfam ABC transporter 105 255 IPR003439 GO:0005524
Lja6g1230 681 Pfam ABC-2 type transporter 412 620 IPR013525 GO:0016020|GO:0140359
Lja6g1230 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 3 677 - -
Lja6g1230 681 CDD ABCG_EPDR 101 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1230 Lja-Chr6 36193196 36196690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1230 73 288 Calmodulin-binding Proteins AT2G36910 29.279 5.85e-13 70.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1230 6 36193196 36196690 Lja6g1230 6 36193196 36196690 ECH