Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1229 ATGGCTATTTCTCATTGTTTGGTTCCTTTAGTCATTTTCATGGTTCTCTTTGTACAAGCCATGTCCGTTGGCACTGATCTTGATACATGGAGTTGGTTTGATGCTCGTGCAACCTTCTACGGTGACTTTAAGGAGGGTGCTTGCGGTTATGGTGATCTCTGGAAACAAGGGTATGGGCTTCATACCACAGCACTAAGCACAACCCTATTCAACAATGAACTTGCATGTGGTCCATGTTTTGAGATCAAGTGTGTCAACACTGCTTGGTGCAGAAAGGACGCACCCTCAATTCTAGTGACCGCAACAAATTTTTGTTCTCCCAATTATACCAAAATCGTTGACGTTTGGTGCAATCCGCCACAAAAGAACTTCGACTTGACAGTGTTCATGTTCACCAAAATTGCATGGTATAGAGCAGGGGTTGTCCCTGTCCTAGCTCGTCGTGTTCCATGCCATAAAATTGGGGGTGTCAAATTTGAGATTAAGGGGAATCCTTATTATTTGATGGTTTTGGTGTACAATGTTGGAAATGCTGGCGATCTTCAAATGGCACACAATTGGGGACAAATTTGGGATGTAGGAACTAATTTGGTAGGACAAGCCTTGTCATTTAGGGTGACTACTAGTGATGGTAAAACATTGGACTTTGTTAATGTTGCCCCTGCACAATGGCAATTTGGGCAGACATATCAGTCCAACTTAAATTTTTAG 711 0.4262 MAISHCLVPLVIFMVLFVQAMSVGTDLDTWSWFDARATFYGDFKEGACGYGDLWKQGYGLHTTALSTTLFNNELACGPCFEIKCVNTAWCRKDAPSILVTATNFCSPNYTKIVDVWCNPPQKNFDLTVFMFTKIAWYRAGVVPVLARRVPCHKIGGVKFEIKGNPYYLMVLVYNVGNAGDLQMAHNWGQIWDVGTNLVGQALSFRVTTSDGKTLDFVNVAPAQWQFGQTYQSNLNF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1229 236 Gene3D - 18 152 IPR036908 -
Lja6g1229 236 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 232 IPR007117 -
Lja6g1229 236 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 156 IPR007112 -
Lja6g1229 236 Gene3D - 156 236 IPR036749 -
Lja6g1229 236 SUPERFAMILY PHL pollen allergen 155 232 IPR036749 -
Lja6g1229 236 Pfam Expansin C-terminal domain 182 221 IPR007117 -
Lja6g1229 236 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Lja6g1229 236 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Lja6g1229 236 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Lja6g1229 236 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Lja6g1229 236 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Lja6g1229 236 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Lja6g1229 236 Pfam Lytic transglycolase 62 144 IPR009009 -
Lja6g1229 236 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Lja6g1229 236 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Lja6g1229 236 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Lja6g1229 236 PRINTS Expansin/Lol pI family signature 180 194 IPR007118 GO:0005576
Lja6g1229 236 PANTHER EXPANSIN-A15 10 236 IPR002963 GO:0009664
Lja6g1229 236 SUPERFAMILY Barwin-like endoglucanases 31 174 IPR036908 -
Lja6g1229 236 PANTHER EXPANSIN-A21-RELATED 10 236 - -
Lja6g1229 236 SMART dpbb_1 62 146 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1229 Lja-Chr6 36126399 36128008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1229 31 236 Expansin Gene Family AT5G39280 58.667 6.21e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1229 - - lja:Lj1g3v3008810.1 346.665