Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1227 ATGAGTTCTCCATGCCCATCAGAGCTATTGTTCAGTTCAAGCAGCACAGTTTCAATTCCTTCAAATTCTGCATCAGAAAACAACATGGGCAGTGTCCAATTAAACAGGCCTTCCTCACCTTCAATTATGACAAGGGTGGCCATGAGAGCCTCTAGATCAAGATGGTTCACCTTCTTGAGAAGAGTTTTCCATTACCAGAATGGACCAAGGTCTGATCTTGGCTCCAACCCTTTCAATTCCAGCACTTGGATGATGCTGGAATTGATTGCTCTGATGGTGCAGATAACCAGCACAACTTTCACCTTAGCAATTTCAAAGAGTGAGAAGCCTATTTGGCCAATGAGGATTTGGATAGCAGGTTATGACATAGGTTGTGTACTTAATTTGTTGCTTCTTTGTGGCCGCTACCATCAGCTTCATGTGACTCATGATGGCCTTTCTGATATGGAGCAGCAGAGTAACAATGAAGAAACCAGTGTATACAGGAGCTCACCTTTGATGATGAAATGCAGAAGCTCACTGGAACTTTTCTTTGCCATATGGTTTGTAATGGGAAATGTTTGGGCATTTGACTCACGTTTTGGATCATTCCAACAAGCTCCAAAGCTCCAAATCCTCTGCATCATCCTTCTTGCTTGGAATGCAATCTGCTACTCTTTCCCTTTTCTGCTGTTTCTTCTCCTCTGCTGTTGCGTGCCACTAGTTAGCACCCTCCTCGGATACAACATGAACATGGGTTCCTCTGCTAGAGGTGCCTCTGAGGATCAAATCTCACAACTTGCCAGCTGGAAATTTAAAGCTGCTCATGCCAACTTAGACCTCAGCAATGATGACCCTCAAAGCAGTGAAAGATTGATCAATGAAGATCCTGAGTGTTGCATTTGCTTAGCCAAGTACAAAGACAAGGAAGAAGTTAGGCAACTGCCCTGTTCCCATTTGTTCCACCAAAAATGTGTGGATCAATGGCTAAAGATTATATCATGCTGTCCTCTTTGTAAACAAGGATTACAAAGATAG 1017 0.4326 MSSPCPSELLFSSSSTVSIPSNSASENNMGSVQLNRPSSPSIMTRVAMRASRSRWFTFLRRVFHYQNGPRSDLGSNPFNSSTWMMLELIALMVQITSTTFTLAISKSEKPIWPMRIWIAGYDIGCVLNLLLLCGRYHQLHVTHDGLSDMEQQSNNEETSVYRSSPLMMKCRSSLELFFAIWFVMGNVWAFDSRFGSFQQAPKLQILCIILLAWNAICYSFPFLLFLLLCCCVPLVSTLLGYNMNMGSSARGASEDQISQLASWKFKAAHANLDLSNDDPQSSERLINEDPECCICLAKYKDKEEVRQLPCSHLFHQKCVDQWLKIISCCPLCKQGLQR* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1227 338 SMART ring_2 292 332 IPR001841 -
Lja6g1227 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 337 IPR013083 -
Lja6g1227 338 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 23 337 - -
Lja6g1227 338 CDD RING-H2_RNF111_like 290 333 - -
Lja6g1227 338 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 337 - -
Lja6g1227 338 MobiDBLite consensus disorder prediction 1 34 - -
Lja6g1227 338 Pfam Ring finger domain 291 333 IPR001841 -
Lja6g1227 338 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
Lja6g1227 338 SUPERFAMILY RING/U-box 283 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1227 Lja-Chr6 36093761 36097563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1227 45 336 C3H Transcription Factor Family AT4G26580 67.797 7.08e-139 395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1227 6 36093761 36097563 Lja6g1227 6 36093761 36097563 ECH