Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1216 ATGCCTGGAACCTTAAGGAATCTCTCACTTTCTCCCACAATCTTCTCCTTCACCTTGCTTCTCTCATTAAACTCACTTCTTCTCTTTCCATTTTGTTACTCCCTTAATGAACAAGGCCAAGCTCTTTTAGCATGGAAGAGCAGTTTAAACAGCACTTTAGATTCATTAGCATCATGGAGTTCTTCAGATTCAGCTCCAACCCCATGCAACTGGTTTGGGGTGTATTGCAACTCACAAGGAGAAGTGATTGAGATAAACCTGAGATCAGTGAACTTGCAAGGCTCATTTCCTTCAAATTTTCAATCTCTCAGGTCCTTGAAGATTCTTGTTCTCTCATCAACCAACATCACAGGCAGGATTCCAAAAGAGATTGGAGACTATCAAGAACTCACCTTAGTTGATCTCAGTGGCAATTCTCTCTTGGGTGAAATCCCAGAAGAGATTTGCAGTCTAAGCAATCTGCAGAGTTTATCTCTGCATACAAACTTCCTTGAAGGCAACATTCCATCCAACATTGGAAATCTATCAAGTCTGGTCAACTTGACACTCTTTGACAATCACTTGAGTGGTGAAATTCCAAAAAGTATTGGATCCTTAAGAAATCTCCAAGTGTTCAGAGCAGGTGGCAATAAGAACCTCAAGGGTGAGATCCCATGGGAGATTGGAAACTGCACCAGCTTGGTCATGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAGCCTTCCTTCTTCAATCCAATTGCTGAAAAGAATCAAGACCATAGCCATTTACACAACTCTATTGTCAGGCTCCATTCCTGAAGAGATTGGCAATTGCAGTGAGTTGCAGAACTTGTACTTGTATCAGAATTCTATTTCAGGTTCTATCCCAAGCCAAATTGGAGAGCTCAGTAAGCTCAAGAGTCTACTTTTATGGCAGAACAACATAGTAGGTACAATCCCAGAAGAGATTGGAAGATGCACAGAGATGGAAGTCATAGACTTATCAGAAAATCTTCTCACAGGTAGCATACCAAAGAGTTTTGGTCAGCTTTCAAATCTCCAAGGTCTTCAACTGAGTGTCAATCACCTCTCAGGCATAATACCTCCTGAGATTTCAGATTGCACTTCTCTGACTCAATTGGAAGTTGACAACAATGCTCTCTCTGGAGAGATTCCTGATCATATTGGCAACTTGAGGAGCTTGAATCTATTCTTTGCCTGGCAGAACAAGCTGACAGGAAAAATTCCAGATAGTCTTTCACAGTGCCAAGACCTTCAGGCAATTGATCTTTCCTACAACAACTTGATTGGTCCAATACCGAAACAATTGTTTGGGTTGAGGAATCTCACCAAATTGCTGCTTCTTTCCAATGATTTATCAGGCTTTGTTCCACCTGATATTGGAAACTGCACAAGCCTCTACAGGCTTAGATTGAATCACAATAGACTGGCAGGTAACATTCCACCTGAGATTGGCAACTTGAAGAGTTTGAATTTTGTGGATATGAGCAGCAATCATCTTGTAGGGGAGATTCCTCCAACACTATCTGGATGCCAGAATCTTGAGTTTCTGGACCTTCATTCCAATAGTCTCACAGGTTCTGTTCCAGATTCTCTCCCCAAAAGCCTACAATTGATTGATTTTTCTGAAAACAGGCTAACAGGTGCTTTGACTCACACCATTGGTTTGTTAACCGAGTTAACCAAACTCAACCTGGGAAAGAATCAACTAAGTGGAAGAATCCCAGCAGAGATCTTATCTTGCACTAAGCTACAGCTTCTAGACTTAGGAAGCAATAGTTTCACTGGAGAAATACCCAAGGAAGTGGCTCTAATTCCTTCACTAGAAATCTCTCTCAATCTTAGCTGCAACCAGCTTTCTGGTGAAATCCCATCTCAGTTCTCTAGTCTTAGCAAACTAGCAGAGCTTGATCTCTCACACAACAAGCTTTCAGGGCATTTAGGTGCTCTCTCTGATCTTCAGAATCTTGTTTCCTTAAATGTTTCCTTCAATGGCTTCACTGGTGAGTTGCCTAACACCCCATTTTTCCACAAACTCCCTCCCAGTGATCTTGCTGAAAATGAAGGCCTCTACATTGCTGGGGGTGTTGTATCTTCATCTGACAGAATGGAAACCAAAGGCCATGCCAAATCAGCTATGAAGTTTACCATGACCATTCTTTTAAGCACCAGTGCAGTACTAGTGCTGCTCACAGTCTATGTCTTGGTTAAAACTCACATTGCCAACAGGGTACTCATGGAAAATGAGAATTGGGAGATGACTTTGTATCAGAAGCTAGATTTCTCCATTGATGACATTGTCTTGAACTTGACATCAGCCAATGTGATTGGTACTGGAAGTTCTGGGGTTGTGTACAAGGTGGCAATTCCACATGGAGAAACTCTAGCAGTTAAAAAAATGTGGTCGTCAGACGAGTTTGGAGCATTCAATTCTGAAATTCAAACCTTGGGGTCAATCAGGCACAAGAATATAATCAGGCTTCTGGGATGGGCTTCCAATAAGAACCTTAAGCTTCTCTTTTATGACTACCTCCCAAATGGAAGCTTGAGCTCATTAATTCATGGTTCAGGAAAGGGAAAAGCAGAATGGGAGATAAGATTTGATGTTGTGTTAGGTGTGGCTCACGCACTTTCATATCTGCACCATGATTGTTTGCCAGCTATAATGCATGGAGATGTCAAAGCCATGAATGTGTTATTAGGTCCTGGATATCAACCTTATCTTGCTGACTTTGGCCTAGCTAGAATTGCAACTGAAAACAGTGACAATAGTGAATCCAAGCCAGTCCAAAGACACTACCTTGCTGGTTCTTATGGATACATGGCTCCAGAACATGCATCAATGCAGCCTATCACTGAGAAAAGTGATGTCTACAGTTTTGGTATTGTTCTGCTTGAGGTTCTTACAGGAAGGCACCCTTTGGATCCAACTATACCAGGGGGTGCAAGCTTGGTTCAATGGGTGAGGAACCATTTGGCTAGCAAAGGAGATCCATCTGACATTCTTGACTCAAATCTGAGAGGGAGGGCTGACCCATCCATGCATGAGATGCTACAAACTCTAGCAGTGTCATTTCTCTGTGTGAGCACCAGAGCTGGTGACAGGCCAACAATGAAGGACATTGTTGCAATGCTCAAGGAAATTAAACCTGTTGAAACCTCAAGGGGAGAAAATGATAAATTGAAAGGAGGTTTCACAGCTCATAGTTCCCCACCACCACCTAAGAATGTGGTTTCACATGGATCTTCTTCATGTTCCTATAATTTCTCAGATGATTCAGTCAGTTGA 3291 0.4224 MPGTLRNLSLSPTIFSFTLLLSLNSLLLFPFCYSLNEQGQALLAWKSSLNSTLDSLASWSSSDSAPTPCNWFGVYCNSQGEVIEINLRSVNLQGSFPSNFQSLRSLKILVLSSTNITGRIPKEIGDYQELTLVDLSGNSLLGEIPEEICSLSNLQSLSLHTNFLEGNIPSNIGNLSSLVNLTLFDNHLSGEIPKSIGSLRNLQVFRAGGNKNLKGEIPWEIGNCTSLVMLGLAETSISGSLPSSIQLLKRIKTIAIYTTLLSGSIPEEIGNCSELQNLYLYQNSISGSIPSQIGELSKLKSLLLWQNNIVGTIPEEIGRCTEMEVIDLSENLLTGSIPKSFGQLSNLQGLQLSVNHLSGIIPPEISDCTSLTQLEVDNNALSGEIPDHIGNLRSLNLFFAWQNKLTGKIPDSLSQCQDLQAIDLSYNNLIGPIPKQLFGLRNLTKLLLLSNDLSGFVPPDIGNCTSLYRLRLNHNRLAGNIPPEIGNLKSLNFVDMSSNHLVGEIPPTLSGCQNLEFLDLHSNSLTGSVPDSLPKSLQLIDFSENRLTGALTHTIGLLTELTKLNLGKNQLSGRIPAEILSCTKLQLLDLGSNSFTGEIPKEVALIPSLEISLNLSCNQLSGEIPSQFSSLSKLAELDLSHNKLSGHLGALSDLQNLVSLNVSFNGFTGELPNTPFFHKLPPSDLAENEGLYIAGGVVSSSDRMETKGHAKSAMKFTMTILLSTSAVLVLLTVYVLVKTHIANRVLMENENWEMTLYQKLDFSIDDIVLNLTSANVIGTGSSGVVYKVAIPHGETLAVKKMWSSDEFGAFNSEIQTLGSIRHKNIIRLLGWASNKNLKLLFYDYLPNGSLSSLIHGSGKGKAEWEIRFDVVLGVAHALSYLHHDCLPAIMHGDVKAMNVLLGPGYQPYLADFGLARIATENSDNSESKPVQRHYLAGSYGYMAPEHASMQPITEKSDVYSFGIVLLEVLTGRHPLDPTIPGGASLVQWVRNHLASKGDPSDILDSNLRGRADPSMHEMLQTLAVSFLCVSTRAGDRPTMKDIVAMLKEIKPVETSRGENDKLKGGFTAHSSPPPPKNVVSHGSSSCSYNFSDDSVS* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1216 1096 Gene3D Ribonuclease Inhibitor 209 433 IPR032675 -
Lja6g1216 1096 SUPERFAMILY RNI-like 612 674 - -
Lja6g1216 1096 Pfam Leucine rich repeat 612 666 IPR001611 GO:0005515
Lja6g1216 1096 Pfam Leucine rich repeat 323 381 IPR001611 GO:0005515
Lja6g1216 1096 SMART serkin_6 771 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1216 1096 ProSitePatterns Protein kinases ATP-binding region signature. 777 800 IPR017441 GO:0005524
Lja6g1216 1096 Pfam Leucine rich repeat N-terminal domain 36 77 IPR013210 -
Lja6g1216 1096 Gene3D Ribonuclease Inhibitor 434 533 IPR032675 -
Lja6g1216 1096 Gene3D Ribonuclease Inhibitor 611 695 IPR032675 -
Lja6g1216 1096 Gene3D Phosphorylase Kinase; domain 1 736 844 - -
Lja6g1216 1096 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 1062 - -
Lja6g1216 1096 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1062 - -
Lja6g1216 1096 ProSiteProfiles Leucine-rich repeat profile. 633 655 IPR001611 GO:0005515
Lja6g1216 1096 SMART LRR_typ_2 654 678 IPR003591 -
Lja6g1216 1096 SMART LRR_typ_2 344 368 IPR003591 -
Lja6g1216 1096 SMART LRR_typ_2 631 653 IPR003591 -
Lja6g1216 1096 SMART LRR_typ_2 440 464 IPR003591 -
Lja6g1216 1096 SMART LRR_typ_2 151 175 IPR003591 -
Lja6g1216 1096 SMART LRR_typ_2 103 127 IPR003591 -
Lja6g1216 1096 SMART LRR_typ_2 296 320 IPR003591 -
Lja6g1216 1096 SMART LRR_typ_2 488 512 IPR003591 -
Lja6g1216 1096 SMART LRR_typ_2 558 582 IPR003591 -
Lja6g1216 1096 SUPERFAMILY RNI-like 289 610 - -
Lja6g1216 1096 Gene3D Ribonuclease Inhibitor 534 610 IPR032675 -
Lja6g1216 1096 Gene3D Ribonuclease Inhibitor 35 196 IPR032675 -
Lja6g1216 1096 MobiDBLite consensus disorder prediction 1073 1096 - -
Lja6g1216 1096 Gene3D Transferase(Phosphotransferase) domain 1 845 1066 - -
Lja6g1216 1096 SUPERFAMILY RNI-like 84 382 - -
Lja6g1216 1096 ProSiteProfiles Protein kinase domain profile. 771 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1216 1096 PRINTS Leucine-rich repeat signature 515 528 - -
Lja6g1216 1096 PRINTS Leucine-rich repeat signature 631 644 - -
Lja6g1216 1096 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Lja6g1216 1096 SUPERFAMILY Protein kinase-like (PK-like) 770 1046 IPR011009 -
Lja6g1216 1096 Pfam Protein kinase domain 774 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1216 1096 MobiDBLite consensus disorder prediction 1054 1096 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1216 Lja-Chr6 35935261 35939075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1216 32 1095 Receptor kinase-like Gene Family AT5G56040 67.195 0.0 1424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja6g1216 Pkinase 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1216 - - gmx:100802880 1773.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1216 6 35935261 35939075 Lja6g1216 6 35935261 35939075 ECH