Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1215 ATGCCACAGGAGAGCTGCCAAAACTCATTTTTCACATCTCCTTCAAAGAGAGGATTGAAGGGCCTGGTCTCTATCAACAAGGAGCCTTCATTCACTACTACGGAGGAGAGTTTCAATGATCATGAATTGGCTCAGAGGAAAGCAGAGGAAGCAGGTTGGAGAAGATACCAAGCATCACAATGGCTTCATCAAATGGACAACGTTTCATCAGCATCACTCCCTCCACAACCTTCAGAAGAAGAGTTTTGCCTGACCCTCCGCAACGGCCTCATTCTCTGCAACGTCCTCAACAAAATCAACCCCGGTGCTGTTCTAAAGGTTGTGGAGAATCCTGGCCTTGCTGTTCAGTCTGCAGAGGGAGCTGCACACTCTGCTATTCAGTATTTTGAGAACATGAGGAACTTTCTGGATGCTGTTAAGGCCATGCAGCTTTTGACTTTTGAAGCTTCAGATTTGGAGAAGGGTGGTTCATCGAATAAAGTTGTGGACTGCATTCTATGTCTGAAGGGGTTCTATGAGTGGAAGCTATCTGGTGGAGTTGGTGTGTGGAAGTATGGGGGAACCGTGAGGATTACTTCTTTCCCAAAGAAGTCTCCTTCTTCCGTAATTGGCAGTGAAAGTGCGGATGAATCATTAGACGAGTCAGAGTCGTCCCAGTATGAGCAGCTGCTAGAGTTTCTTAACCTATCTGAAGAGTTCTTGATTGAAGAAACCAGAACTGCAAGTGCTTTGGCTTTCCTTTTTGATAACTTTGGACTTAGACTTCTTCAGGCTTACCTTAGAGAGACAGAAGGGATTGAAGATCTGCCTCTCAATGCAATGGTGATTGATACCTTACTCCGCAAGGTAGTCAAGGATTTCTCATCTCTGCTTGTTTCTCAAGGAACTCAGCTTGGACTTCTCCTGAACAAAATATTGAACGGTGATATGGGATGTCTCTCGAAGAGAGAGTTTATTGAAGCTATCTCACTATATCTCAATCAAAGAAGTAGTTTGGCATCAAATGATTTCTCCAAGTTCTGCATTTGTGGTGGCAAGCCTGATAAAATTCGACAAAATGTCAATTATTCTGCTCATTATTCTGAAGTAATCAACACGCAACAGAAACAACTTGAGGGGATGAAATACTTTTTCCAAGAGACAAAAATGGAGGTTAAACATATTCAATCTGAGTGGGAACAAGAACTGATTAGGCTAGAGAATCATATCAAGAGCCTTGAAGTGGCCTCCTCATCCTACCACAAAGTTTTGGAGGAGAACCGTGTTCTTTACAATCAAGTACAAGATCTCAAAGGAGCCATTAGGGTCTATTGTAGAGTGAGGCCCTTTTTACCAGGACAATCGAAGTCACTGACTACTGTAGACTATATTGGAGAAAATGGAGACATGATGATTGTAAATCCCCTTAAGCAAGGAAAAGAGGCAAGAAGGGTATTTTCATTCGATAAGGTGTTTGGAACAAGTGCAACACAAGAACAAATTTATGTTGACACTCAACCCTTGATCAGGTCTGTTCTAGATGGTTACAATGCATGCATCTTCGCATATGGACAGACTGGCTCAGGGAAGACTTACACCATGAGTGGTCCTGATCTGACATCTGAAGAGACATGGGGTGTAAACTATAGGGCTTTGCGTGACTTATTTCATATCTCAAAGGATAGGGCAGATTCCATAAAGTATGAAGTCTTCGTCCAGATGATTGAAATATACAATGAACAAGTGAGGGATTTATTAGTCAGTAATGGCTCTAACAGAAGATTAGATATACGAAACAATTCTCAACTGAATGGCCTCAATGTTCCTGATGCATATTTAGTCCCGGTTACTTGTACTCAAGATGTTCTATATTTAATGGAAGTTGGTCAGAAGAACCGTGCTGTGGGTGCTACGGCTCTCAACGAGAGAAGCAGTCGTTCTCATAGTGTTTTGACTGTTCACGTTCGAGGCAGGGAGTTAGTTTCTGGCTCTATTCTCAGGGGTTGTCTTCATCTTGTGGATTTGGCTGGAAGTGAGAGGGTTGAAAAATCTGAGGCTGTTGGTGAGAGATTGAAGGAGGCTCAACATATAAATAGATCACTTTCAGCACTTGGGGATGTTATATCTGCTCTGGCACAGAAAAGTCCACATATCCCTTATAGAAATAGCAAGCTCACACAAGTGTTACAAGATTCTTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATATAAATCCTGAACTTAATGCTATTGGGGAGACTATTAGCACACTCAAGTTTGCTGAGAGGGTTTCATCCATTGAACTTGGGGCTGCTCAATCTAACAAAGAAACTGGCGAAATCTTAGAACTAAAGGAAGAGATATCAAGTCTGAAACTGGCATTGGAGAGGAAGGAAGCAGAACTGGAACAGTGGAAGACGGCAGGTAATGCTCGAAATACCATAGAGTCTCAGAAACCAAGAGCTGTTTCACCTTATCATTTTCCCAAACATGGTCCAAGTGGCATCATGAAGCCTGACACTAGTCCACGTCTCACGGATGAAAGAAGCTTTGAGTCTAGAAGTTGTTCTTCTGGTAAGCAAAGAAGGTCAAGGTTTCCCTCGGCATTTATGGACAAGGACACCATGCCAAAAATGTCACTTCTGACTGAAGACAAAGTAGTGAGCTCAGGGAAAGGAAGATCACCATCACCTCCAGTCCGAAGATCATCATCCACTGATAGAGGGTCTGTTATTAAGAGTAGGGTAAAAAATGACACAGAACACAACCAACCAATATTAAAGCATCCATTTCCAGCTAGAGTACCTTCTAACAAATCCCTTGTGACAATGCCAATGGCTGCATCCCTTCACAACAATGCGAGGGAGCACGCGAATTCGCGAGAGCCAGTAAAGCAGGAAAGCATTTCTGAAACACTCTTCAACCTCCAGAAGGCTAACTCCAGGAAAGTTCCTCAAGAACTTGAAGAAGAACAGTTCAAGCAAGCACTTAGTGTAGTAAGACAAGGTGGTATTAGAAAAAGCAAACTTGAAAGTAAGGTTAAGGCCAAGCATCATCAATTATCACCCTATAAGATTCAATTTACAGGTGAAATGACTGTGGATCCATCTCCAAAGAGTGACTACTCTGAGCATGAAAATGAACTTAGATTAGTCGAGTCTGCTGTCCATAGTGCTATAAATATCAAAAAGATACATCAGAACTTGCCAAAGAATTTTCAGAACCTTGAATCAAGAGGAATAGTGCAAACTGGAGAGCCTATTTTGGCAACCAAAGTTGAAAACAAACTTTTTAATGGTTCAGGTAGCAATATTAAAGAAGGAACCAATGCATCCATGCCTGAATTTAGAAGAAGCCGTTCTACTCCACGTGGAAAGTTTTTGGGTTTATCTTAA 3378 0.4201 MPQESCQNSFFTSPSKRGLKGLVSINKEPSFTTTEESFNDHELAQRKAEEAGWRRYQASQWLHQMDNVSSASLPPQPSEEEFCLTLRNGLILCNVLNKINPGAVLKVVENPGLAVQSAEGAAHSAIQYFENMRNFLDAVKAMQLLTFEASDLEKGGSSNKVVDCILCLKGFYEWKLSGGVGVWKYGGTVRITSFPKKSPSSVIGSESADESLDESESSQYEQLLEFLNLSEEFLIEETRTASALAFLFDNFGLRLLQAYLRETEGIEDLPLNAMVIDTLLRKVVKDFSSLLVSQGTQLGLLLNKILNGDMGCLSKREFIEAISLYLNQRSSLASNDFSKFCICGGKPDKIRQNVNYSAHYSEVINTQQKQLEGMKYFFQETKMEVKHIQSEWEQELIRLENHIKSLEVASSSYHKVLEENRVLYNQVQDLKGAIRVYCRVRPFLPGQSKSLTTVDYIGENGDMMIVNPLKQGKEARRVFSFDKVFGTSATQEQIYVDTQPLIRSVLDGYNACIFAYGQTGSGKTYTMSGPDLTSEETWGVNYRALRDLFHISKDRADSIKYEVFVQMIEIYNEQVRDLLVSNGSNRRLDIRNNSQLNGLNVPDAYLVPVTCTQDVLYLMEVGQKNRAVGATALNERSSRSHSVLTVHVRGRELVSGSILRGCLHLVDLAGSERVEKSEAVGERLKEAQHINRSLSALGDVISALAQKSPHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAIGETISTLKFAERVSSIELGAAQSNKETGEILELKEEISSLKLALERKEAELEQWKTAGNARNTIESQKPRAVSPYHFPKHGPSGIMKPDTSPRLTDERSFESRSCSSGKQRRSRFPSAFMDKDTMPKMSLLTEDKVVSSGKGRSPSPPVRRSSSTDRGSVIKSRVKNDTEHNQPILKHPFPARVPSNKSLVTMPMAASLHNNAREHANSREPVKQESISETLFNLQKANSRKVPQELEEEQFKQALSVVRQGGIRKSKLESKVKAKHHQLSPYKIQFTGEMTVDPSPKSDYSEHENELRLVESAVHSAINIKKIHQNLPKNFQNLESRGIVQTGEPILATKVENKLFNGSGSNIKEGTNASMPEFRRSRSTPRGKFLGLS* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1215 1125 SUPERFAMILY Calponin-homology domain, CH-domain 55 193 IPR036872 -
Lja6g1215 1125 SMART kinesin_4 431 769 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g1215 1125 MobiDBLite consensus disorder prediction 890 905 - -
Lja6g1215 1125 Pfam Calponin homology (CH) domain 75 173 IPR001715 GO:0005515
Lja6g1215 1125 PRINTS Kinesin heavy chain signature 711 732 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g1215 1125 PRINTS Kinesin heavy chain signature 631 648 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g1215 1125 PRINTS Kinesin heavy chain signature 662 680 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g1215 1125 PRINTS Kinesin heavy chain signature 508 529 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g1215 1125 Coils Coil 775 802 - -
Lja6g1215 1125 MobiDBLite consensus disorder prediction 1093 1111 - -
Lja6g1215 1125 Gene3D - 45 172 IPR036872 -
Lja6g1215 1125 PANTHER KINESIN-LIKE PROTEIN KLP-3 20 1120 - -
Lja6g1215 1125 Coils Coil 389 409 - -
Lja6g1215 1125 MobiDBLite consensus disorder prediction 817 931 - -
Lja6g1215 1125 MobiDBLite consensus disorder prediction 836 853 - -
Lja6g1215 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 434 799 IPR027417 -
Lja6g1215 1125 MobiDBLite consensus disorder prediction 1093 1125 - -
Lja6g1215 1125 ProSiteProfiles Kinesin motor domain profile. 433 761 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g1215 1125 ProSiteProfiles Calponin homology (CH) domain profile. 52 173 IPR001715 GO:0005515
Lja6g1215 1125 Pfam Kinesin motor domain 439 761 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja6g1215 1125 Gene3D Kinesin motor domain 375 763 IPR036961 -
Lja6g1215 1125 PANTHER HEAVY CHAIN, PUTATIVE-RELATED 20 1120 - -
Lja6g1215 1125 SMART ch_5 54 171 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1215 Lja-Chr6 35917593 35927429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1215 424 761 Calmodulin-binding Proteins AT5G65930 43.314 2.85e-77 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1215 6 35917593 35927429 Lja6g1215 6 35917593 35927429 ECH
Lja6g1215 6 35917593 35927429 Lja6g1215 6 35917593 35927429 PCT