Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1214 ATGAATGCTAAGTCAGCTTTAGATTTAATGGAGTCTTCATCAGAAGTTCATTTTTCGGGATTTCACATGGATGGTTTTGAGAAAAGAGAGGCCAACACTGAACAACCAACAACATCGGCAACTGACATGTATAAACAACCTTTCATAATAGGTGTTGCTGGGGGTGCTGCATCTGGCAAGAAAACAGTTTGTGACATGATTATTCAGCAACTTCATGACCAGCGAGTTGTCCTTGTTAATCAGGATTCCTTTTACAATAACTTGACTGAGGAGGAAGTTACAAGAGTGCAGGATTACAATTTTGACCATCCTGATGCTTTTGATACTGAGCAATTGCTACTTGTTATGGACAAGTTGAAGCGTGGCGAAGCTGTAGACATCCCGAAGTATGATTTTAAAAGTTGCAAGACTGATGTGTTAAGAAGGGTAAACCCTTCAGATGTTATAATTTTGGAAGGGATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAGTATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGAATTAGGCGTGATACTAATGAGAAGGGTCGGGATATTGGAACTGTTCTTGATCAGTATTCAAAATTCGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTACGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCTGTGATTTGATTGTACAGCATATCCGCACAAAGCTCGGTCAGCATGACCTTTGTAAAATATATCCAAATTTGTATGTAATTCAGACAACTTTTCAGATACGGGGAATGCATACTCTGATCCGTGATGCTCAAATAACAAAGCATGATTTTGTATTTTATGCTGATCGTTTGATTAGATTGGTTGTAGAACACGGCTTGGGGCATCTTCCCTTTACAGAAAAGCAAGTTATCACTCCCACGGGTTCTGTATACACTGGTGTGGATTTTTGTAAGAGATTGTGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTAAGAGCTTGCTGTAAAGGTATCAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTACCAATGGATATCTCAGACCGGCATGTGTTGCTGTTGGACCCTATCCTCGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTTTGCTTATAAGAAAGGGTGTACCAGAGTCCAACATTATATTTCTTAATCTCATATCTGCTCCTTTAGGTGTGCATGTGGTATGCAAAAAATTTCCAAAAATTAAAATAGTGACATCTGAGATTGAGATAGGTTTGAATAAAGATTTCCGTGTCATACCGGGCATGGGCGAGTTTGGCGATAGGTACTTTGGAACAGATGATGATGAACAACTGGTGGTTCCTTCCCAGTAG 1428 0.3999 MNAKSALDLMESSSEVHFSGFHMDGFEKREANTEQPTTSATDMYKQPFIIGVAGGAASGKKTVCDMIIQQLHDQRVVLVNQDSFYNNLTEEEVTRVQDYNFDHPDAFDTEQLLLVMDKLKRGEAVDIPKYDFKSCKTDVLRRVNPSDVIILEGILVFHDPRVRELMSMKIFVDTDADVRLARRIRRDTNEKGRDIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVACDLIVQHIRTKLGQHDLCKIYPNLYVIQTTFQIRGMHTLIRDAQITKHDFVFYADRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPMDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPLGVHVVCKKFPKIKIVTSEIEIGLNKDFRVIPGMGEFGDRYFGTDDDEQLVVPSQ* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1214 475 PRINTS Uridine kinase signature 47 64 - -
Lja6g1214 475 PRINTS Uridine kinase signature 177 187 - -
Lja6g1214 475 PRINTS Uridine kinase signature 213 226 - -
Lja6g1214 475 PRINTS Uridine kinase signature 122 137 - -
Lja6g1214 475 PRINTS Uridine kinase signature 191 202 - -
Lja6g1214 475 PRINTS Uridine kinase signature 77 88 - -
Lja6g1214 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 238 IPR027417 -
Lja6g1214 475 Gene3D - 249 464 IPR029057 -
Lja6g1214 475 Gene3D - 43 248 IPR027417 -
Lja6g1214 475 PANTHER URIDINE KINASE 15 466 - -
Lja6g1214 475 Pfam Phosphoribulokinase / Uridine kinase family 49 233 IPR006083 GO:0005524|GO:0016301
Lja6g1214 475 CDD PRTases_typeI 322 437 IPR000836 -
Lja6g1214 475 CDD UMPK 49 245 IPR000764 -
Lja6g1214 475 PANTHER URIDINE KINASE 15 466 - -
Lja6g1214 475 SUPERFAMILY PRTase-like 248 465 IPR029057 -
Lja6g1214 475 TIGRFAM udk: uridine kinase 45 245 IPR000764 -
Lja6g1214 475 Pfam Uracil phosphoribosyltransferase 263 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1214 Lja-Chr6 35720035 35727070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1214 1 467 PRT Gene Family AT4G26510 82.729 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1214 K00876 - gmx:100792258 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1214 6 35720035 35727070 Lja6g1214 6 35720035 35727070 ECH
Lja6g1214 6 35720035 35727070 Lja6g1214 6 35720035 35727070 PCT