Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1213 ATGCAGTCTCGCCAAATATTATCTATTATTTTTACATTGCAATTCCTTGCATTTGATGCTTATGAATCAATGATCTGTGGCAATCCACCCAAGGCCATTACCGTGAACCAATCAGGCAAAGGAGATTTCAGAACAATTCAAAATGCCATTGATTTTGTTCCTGCAGGAAATTCTCAATGGATTCACATCAAAATTTCTTCTGGTGTTTACAGAGAGCAAATTGAAATTCCCATGAACAAATCATGTATTTATCTTGAAGGAGGTGGTAGCGGCTCGACAAGTATCGAATGGAGTACACATGAAGGTGCTACTTTCTATTCAAATGCAAATAATACAGTAGCAAAGGGCATTACTTTCAAGAATATATTAAACCGCCCTGTAATATTAGAGGAGGAGAAAAACAAGATTACACAAGCTGTGGCAGCTCGGGTCCATGCAGACAAATGTGCTTTCTTTAATTGTGCTTTTCTAGGGGTGCAAGATACCTTATATGATGAATATGGTCGCCATTACTACCATAATTGCTACATTCAAGGTGGAGTTGATTTCATATTCGGGAATGGTCAATCAATTTTTGAGGCAAGTACAATATTTTTTTCAATGGGGAAGTTTGGTCCCAAAATGGATGGAGTTATCACAGCACATGAAAGGGATTCACCAAATGATCCAAGTGGGTTTGTGTTTAAAAATTGTATCATAAACGGGACAGGAGGAAAAGCTGAACTTGGAAGAGCTATGGCTGCTTATTCTAGGGTCATCATAGCCAATTCATTCTTAACAAATGTGGTTCGACCTGGGGGTTGGAGTTCTCGGAAATATGCAGGGCACGAAAACAGAGGACCAGGAGTGAAAGTTCCGCGCGTGAAATGGATGAAGCACTTGAGTAAGTCTGCGGTCAATAAATTCTTGAGTATCTCTTATATTGATGAAGAAGGGTGGGTTAACAAATTGCCAACAAAAATCTTCACCTGA 972 0.392 MQSRQILSIIFTLQFLAFDAYESMICGNPPKAITVNQSGKGDFRTIQNAIDFVPAGNSQWIHIKISSGVYREQIEIPMNKSCIYLEGGGSGSTSIEWSTHEGATFYSNANNTVAKGITFKNILNRPVILEEEKNKITQAVAARVHADKCAFFNCAFLGVQDTLYDEYGRHYYHNCYIQGGVDFIFGNGQSIFEASTIFFSMGKFGPKMDGVITAHERDSPNDPSGFVFKNCIINGTGGKAELGRAMAAYSRVIIANSFLTNVVRPGGWSSRKYAGHENRGPGVKVPRVKWMKHLSKSAVNKFLSISYIDEEGWVNKLPTKIFT* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1213 323 Gene3D - 28 321 IPR012334 -
Lja6g1213 323 SUPERFAMILY Pectin lyase-like 29 319 IPR011050 -
Lja6g1213 323 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 320 - -
Lja6g1213 323 Pfam Pectinesterase 33 309 IPR000070 GO:0030599|GO:0042545
Lja6g1213 323 PANTHER PECTINESTERASE 5 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1213 Lja-Chr6 35716271 35717886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1213 31 277 Carbohydrate Esterase AT2G19150 46.032 8.46e-68 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1213 - - cam:101494460 425.246