Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1208 ATGAGCGATTCTGCATACAGGGTTGAAACCACTCCTCGTCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACCTACCGAAAATCTGACCCTTTCAAGATCGGAAAGTGGAATTGGCATTTGTCGGTGGAGAAGAACAGGGTTTTGTTTGTGAAATTGTTCCCAGAGATATCCAATCTAACAAGAGACAATCCCCCAATTGCATCTTTTATTGTTCGGGTGGTTAGTTCTGTTGGAGATCGCAAGTCCCTCACACATCCAGAGATAAAAGACAAAGTGATCAAGAACAATGAGGACTTTGTTTGGGCAATTGAGGTTCCTCTTACTGGGAAATTCATAATTGATGTTGAGTTCCTTGATTTGAAGACTGCATCCCCAAACGGTGGAGAACCTTGCTCTATTTGGGCTGAAGGGTTTACTCAGACAAGATCAAATGCAAAAGCCATAGAGTCTCTTGGAAAAATGCTAACAGAAGGAATCCACACAGACATCACCATCAATGCTTCTGATGGAACTATAGGAGCTCATCGAGCTGTACTTGCTGCCCGTTCACCCGTGTTCTGCAGCATGTTCTCACACAATCTTCAGGAGAAAGAGCTGTCAACTATAAACATCTCAGACATGTCAATTGAAACTTGCCAAGCTTTTCTCAATTATCTTTATGGAATCATAAAAAATGAAGAGTTTCTAATGCACAGGCTGGCCCTTCTGCATGCAGCCGACAAGTATGACATATCTGATCTGAGAGAGGCATGCCATGAGAGTCTCCTAGAAGATATTGACACAAAGAATGTGCTTGACAGGCTCCAGCACGCGTCGCTGTATCAGTTGATGAAACTTAAGATGAGCTGCATCCGCTATCTTGTGAAATTTGGTAAAATATATGAAATCAAGGATGATTTCAATACTTTCCTGCAGAATGCAGATAGGGATCTCATTTCTGAAGTTTTCTATGAAGTTCTTGATGCGTGGAAAGGATTCTGA 987 0.4205 MSDSAYRVETTPRLAQWRIENLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLFPEISNLTRDNPPIASFIVRVVSSVGDRKSLTHPEIKDKVIKNNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNGGEPCSIWAEGFTQTRSNAKAIESLGKMLTEGIHTDITINASDGTIGAHRAVLAARSPVFCSMFSHNLQEKELSTINISDMSIETCQAFLNYLYGIIKNEEFLMHRLALLHAADKYDISDLREACHESLLEDIDTKNVLDRLQHASLYQLMKLKMSCIRYLVKFGKIYEIKDDFNTFLQNADRDLISEVFYEVLDAWKGF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1208 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Lja6g1208 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Lja6g1208 328 PANTHER OS08G0495500 PROTEIN-RELATED 1 328 IPR044714 -
Lja6g1208 328 SUPERFAMILY POZ domain 149 259 IPR011333 -
Lja6g1208 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Lja6g1208 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Lja6g1208 328 PANTHER OS08G0495500 PROTEIN 1 328 - -
Lja6g1208 328 Pfam BTB/POZ domain 155 259 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1208 Lja-Chr6 35607786 35610469 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja6g1208 BTB 1e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1208 K10523 - gmx:100790186 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1208 6 35607786 35610469 Lja6g1208 6 35607786 35610469 ECH
Lja6g1208 6 35607786 35610469 Lja6g1142 6 33140634 33146120 PCT