Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1203 ATGAAGATCACTGTCATGACTGCTGATGAACAAATTCTCACTCTGGATGTGGATCCCAACGAATCTGTAGAAAACGTCAAGGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAGAAGCAACAACTTCTGTTTAATGGGAAGGAGGTGAGGAATCCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTAATGATGGTGTCTGGTGGTGGTGGTGGTGCTGCTGCTTCTAGTGGATCTGCCAATGATTTGAGCTTCAATCCTGATGGATCTGCTGTAAACCCTAGTGCTTTCCAGCAGCACATCAGACGTGATTCTAATATGATGGGTCAGCTCTTTCAGAGTGACCCGGAGCTGGCACAAGCTATTCTAGGGAATGATCTGAATAGACTGCAGGAGATTTTACGATTGCGTCATCGCCAAAAAGATGAATATCGGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGTCAGAAAGGAATTGATGAAAATTGGGAAGCTGCACTTGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTAGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGATTGGGATTGTTGAGACTTTTAGATCAGCGTTACAAAGGAATTGCTCATGGAGTTGGTCAATCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGACTATATTTTACCCTTGCTCATTCTTAGTGTTGGATTCTCCCAATATGGAATTTCTCTTTGGGCTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTAAAAGATAATGTTTTGCGAGTTGGTGGGGGAGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTTTTGATGAGGAAAAATTATCTAAGGAAGCTTCTACCTCAGGTGGCCCAGTTACTTCAGGGAGCAATAATCCATCACAGGGAGGTGTATCATCTGGAGGAGCTTCTGGTGACAAGTCTAAGGACTCTGCTTTTGAAGCCAAAGTTGCTAAGCTTGTTGAGCTGGGATTTGGAAGAGATGAAGTTATACAAGCCCTTCAGTTATGCAATGGCAATGAGGAACAGGCAGCTGGATTTCTCTTTGGCTGA 1230 0.4333 MKITVMTADEQILTLDVDPNESVENVKALLEVETSVPLQKQQLLFNGKEVRNPEKLSALGVKDDDLLMMVSGGGGGAAASSGSANDLSFNPDGSAVNPSAFQQHIRRDSNMMGQLFQSDPELAQAILGNDLNRLQEILRLRHRQKDEYRRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGTIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLQEKDIPSRFFDEEKLSKEASTSGGPVTSGSNNPSQGGVSSGGASGDKSKDSAFEAKVAKLVELGFGRDEVIQALQLCNGNEEQAAGFLFG* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1203 409 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lja6g1203 409 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lja6g1203 409 SUPERFAMILY UBA-like 368 409 IPR009060 GO:0005515
Lja6g1203 409 PANTHER AT13091P 1 408 - -
Lja6g1203 409 Coils Coil 134 154 - -
Lja6g1203 409 Gene3D Acid Proteases 180 326 IPR021109 -
Lja6g1203 409 Gene3D - 372 408 - -
Lja6g1203 409 Pfam UBA/TS-N domain 373 406 IPR015940 -
Lja6g1203 409 Pfam Aspartyl protease 179 301 IPR019103 GO:0004190|GO:0006508
Lja6g1203 409 SMART ubq_7 1 72 IPR000626 GO:0005515
Lja6g1203 409 MobiDBLite consensus disorder prediction 335 368 - -
Lja6g1203 409 CDD UBA_scDdi1_like 373 408 - -
Lja6g1203 409 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Lja6g1203 409 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 409 IPR015940 -
Lja6g1203 409 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Lja6g1203 409 SUPERFAMILY Acid proteases 186 302 IPR021109 -
Lja6g1203 409 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Lja6g1203 409 MobiDBLite consensus disorder prediction 339 365 - -
Lja6g1203 409 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lja6g1203 409 CDD RP_DDI 186 309 IPR019103 GO:0004190|GO:0006508
Lja6g1203 409 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 408 - -
Lja6g1203 409 Gene3D - 1 83 - -
Lja6g1203 409 SMART uba_6 372 409 IPR015940 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1203 1 77 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 29.870 1.62e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1203 K11885 - gmx:100779464 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1203 6 35525843 35534440 Lja6g1203 6 35525843 35534440 ECH