Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1199 ATGACGACGGCAACGCTCACTCTCGGCGCCTTCTCCGCCACTCCGTCACACCGCTTATTCAACTCCCGTCGGGCTTCGATCCGTTCCGTCGCAGCGGAGGCTGTCCAGTCGCGGCGGCCGGCGGCGAGCTTCTACGAGGTCCTCCGCGTGGATCAAGGCGCGTCGCCGACGGAGATCAAGTCGGCTTACCGGAGCCTCGCGAAGGTCTACCACCCCGACGCGGCGGTGCGCCGCTCGCCGGAGGTCGACGGCGGGGACTTCATTCAGATCCGCAACGCGTATGAGACGCTCTCCGATCCGTCGGCCAGGGCGACGTATGACATGTCGCTGTCGGCGGCGAACGGCGGGAGACGGCGGCGGTTTTCATCTCCGCTGACGATGAACCGACGTGCCGGGTCGTACCCGACCCGAAGATGGGAAACGGATCAATGCTGGTAG 438 0.6621 MTTATLTLGAFSATPSHRLFNSRRASIRSVAAEAVQSRRPAASFYEVLRVDQGASPTEIKSAYRSLAKVYHPDAAVRRSPEVDGGDFIQIRNAYETLSDPSARATYDMSLSAANGGRRRRFSSPLTMNRRAGSYPTRRWETDQCW* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1199 145 SUPERFAMILY Chaperone J-domain 41 115 IPR036869 -
Lja6g1199 145 CDD DnaJ 44 99 IPR001623 -
Lja6g1199 145 Pfam DnaJ domain 44 107 IPR001623 -
Lja6g1199 145 SMART dnaj_3 42 102 IPR001623 -
Lja6g1199 145 Gene3D DnaJ domain 28 124 IPR036869 -
Lja6g1199 145 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 19 145 - -
Lja6g1199 145 ProSitePatterns Nt-dnaJ domain signature. 87 106 IPR018253 -
Lja6g1199 145 ProSiteProfiles dnaJ domain profile. 43 110 IPR001623 -
Lja6g1199 145 PRINTS DnaJ domain signature 63 78 IPR001623 -
Lja6g1199 145 PRINTS DnaJ domain signature 82 102 IPR001623 -
Lja6g1199 145 PRINTS DnaJ domain signature 45 63 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1199 Lja-Chr6 35501985 35503033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1199 34 107 C2H2 Transcription Factor Family AT1G74250 40.260 2.85e-09 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1199 6 35501985 35503033 Lja6g1199 6 35501985 35503033 ECH
Lja6g1199 6 35501985 35503033 Lja6g0900 6 19677845 19685340 PCT