Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1195 ATGGAGACTCCAGTCGAAGTCAAACCAACTCTTAGTGCATCTGGATTCTTAGATGACTTGTCTAGCACTTGCAAGATGGATTGTCCAAATGGAACACTATTGCACAAGTCTGAGGCTGAGGTTCCATTTGGCCCTGAAATCAATTTTCACCAGTCAGAATCTACTCTGGTGGGTGTTCATGGATCACAATCTGGAGTTTCGCGGGCTGCTCATCATCAAACGTTGAGGGGTACGATTTACAGGAGCATCCGGGTTGTAGTTTTCTCTAACAGATTCAACTTGCTTATGCCTTTTGGGCCTCTTGCAATTCTTGTACATAATTTGACTGGTCATAATGGATGGGTCTTTGCTCTGAGTTTATTGGGTATAATGCCTCTGGCGGAGCGGCTAGGTTATGCTACAGAGCAGCTAGCATTTTACACTGGAGATACTGTTGGGGGTCTCTTAAACGCTACGTTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGAATGACTCAGGTTGTCAAGCTCTCTCTACTGGGCTCAATTTTGTCAAACATGTTGCTGGTGCTTGGATGTGCATTCTTATGTGGTGGGATTGTATTTCATGAGAAGGCGCAGGTGTTTAATAAGGCAACTGCTTCTGTGAACTCAGGATTGTTGCTGATGGCAGTCATGGGCCTATTTTTTCCTACTGCTCTACATTACACACACACGGAAGTCCATTTGGGGAAATCAGAGTTGTGGCTTTCAAGATTCAGTAGCTGTGTCATGCTTGCAGCCTACACTGCTTACCTATTTTTTCAGTTAAGAAGTGAAAGAAGTCCCTACGTCTCTGTGAACGAGGAAGAGGGTCAGAGTGGAAACGACTCAAATGATGAATCTCCAGATATTTCTAAATGGGAATCAATAATCTGGCTTTTAGTTATGACTGCTTGGATATCAATCTTGTCAGAATATTTGGTTGGCGCTATAGAGGGAGCATCTACTGCTTGGAAAATTCCAGTAACATTTATTAGTGTCATATTGCTTCCACTGGTGGGGAATGCAGCTGAACATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCTTAGGAGTAGCAATAGGGTCATCCACACAGATAGCTATATTTGTGATACCATTTTGTGTGGTTCTTGGATGGATAATGGGAAACCCTATGGACCTAAACTTTCAACTTTTTGAGACTGGATCACTGTTTCTAACTGTTTTAGTAGTAGCCTTCATGTTGCAGGAAGGAACTGCTAATTACTTCAAAGGAATAGTGCTAATTTTCTGCTATCTGATAGTGGCAGCAGGTTTTTATGTACATGTAGACTCATCAGTGTAG 1359 0.4202 METPVEVKPTLSASGFLDDLSSTCKMDCPNGTLLHKSEAEVPFGPEINFHQSESTLVGVHGSQSGVSRAAHHQTLRGTIYRSIRVVVFSNRFNLLMPFGPLAILVHNLTGHNGWVFALSLLGIMPLAERLGYATEQLAFYTGDTVGGLLNATFGNATELIISIYALKSGMTQVVKLSLLGSILSNMLLVLGCAFLCGGIVFHEKAQVFNKATASVNSGLLLMAVMGLFFPTALHYTHTEVHLGKSELWLSRFSSCVMLAAYTAYLFFQLRSERSPYVSVNEEEGQSGNDSNDESPDISKWESIIWLLVMTAWISILSEYLVGAIEGASTAWKIPVTFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQIAIFVIPFCVVLGWIMGNPMDLNFQLFETGSLFLTVLVVAFMLQEGTANYFKGIVLIFCYLIVAAGFYVHVDSSV* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1195 452 Pfam Sodium/calcium exchanger protein 302 443 IPR004837 GO:0016021|GO:0055085
Lja6g1195 452 Pfam Sodium/calcium exchanger protein 114 269 IPR004837 GO:0016021|GO:0055085
Lja6g1195 452 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 33 451 IPR004713 GO:0006812|GO:0008324|GO:0016021
Lja6g1195 452 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 33 451 - -
Lja6g1195 452 TIGRFAM caca2: calcium/proton exchanger 83 445 - -
Lja6g1195 452 Gene3D - 290 444 IPR044880 -
Lja6g1195 452 Gene3D - 141 279 IPR044880 -
Lja6g1195 452 TIGRFAM cax: calcium/proton exchanger 96 445 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1195 Lja-Chr6 35471547 35476952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1195 33 449 Antiporters AT1G55730 66.746 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1195 K07300 - gmx:100799276 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1195 6 35471547 35476952 Lja6g1195 6 35471547 35476952 ECH