Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1189 ATGGGGCGTATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCCGAGGAAGATAACAAGCTCTCTTCCTACATTGCTCAACACGGCACTCGCAACTGGCGTCTCATCCCCAAGAATGCTGGTCTCCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAACTACCTTCGTCCTGACCTTAAACATGGTCAATTCTCAGATTCAGAAGAGCAAACCATTGTGAAGCTTCATTCAGTTTTTGGTAACAGATGGTCACTGATAGCGGCACAACTGCCGGGACGCACTGACAATGATGTGAAAAACCACTGGAACACCAAGCTGAAAAAGAAACTGTCAGGCATGGGTATAGACCCTGTGACCCACAAACCATTCTCCCACCTAATGGCTGAAATCGCGACAACATTGTCACCTCCTCAGGCGGCTCACCTAGCTGAAGCAGCCCTTGGCTGCTTCAAAGATGAGGTGCTCCACCTTCTTACCAAGAAGCCAGTTAACTACCAGGGCCAACATTCTGCTGCAACACTGGGGAATAACATCACTGATTACTTTAACTGTAAGCCAGAAGAAAAGGACGACTCTGTGTCGAAGGCCATACAACAAGAACCTGAAATGATACCGACATATAGACCTTGGGACTCCACTGCAACTACATCTGCAAGTTTCATGATGCCATACAGTGTTTTCCCTACAATGCCTGGGTTTCAATTCAGTCCTGCATCACCATGGAGCCAAAGTATGTGTACAGGAAGCACATGCACAGGCACAGCCATGGATCAGCAAAGCCACCAATTACATGAAAAACTTGAAGAGGAAAATGGGGATGATTCTGAGGCTACAAAAGAAATTAGAAACCTATCCAATATATTCAACTCAGACTGTGTCATGTGGGATTTACCAGCAGATGATTTGATTAACCCCATGGTATAA 942 0.4639 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLSPPQAAHLAEAALGCFKDEVLHLLTKKPVNYQGQHSAATLGNNITDYFNCKPEEKDDSVSKAIQQEPEMIPTYRPWDSTATTSASFMMPYSVFPTMPGFQFSPASPWSQSMCTGSTCTGTAMDQQSHQLHEKLEEENGDDSEATKEIRNLSNIFNSDCVMWDLPADDLINPMV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1189 313 PANTHER TRANSCRIPTION FACTOR MYB80 1 313 - -
Lja6g1189 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja6g1189 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lja6g1189 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lja6g1189 313 Gene3D - 14 66 - -
Lja6g1189 313 CDD SANT 70 112 IPR001005 -
Lja6g1189 313 CDD SANT 17 61 IPR001005 -
Lja6g1189 313 PANTHER F14D16.11-RELATED 1 313 - -
Lja6g1189 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja6g1189 313 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Lja6g1189 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja6g1189 313 Gene3D - 69 128 - -
Lja6g1189 313 SMART sant 13 63 IPR001005 -
Lja6g1189 313 SMART sant 66 114 IPR001005 -
Lja6g1189 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1189 Lja-Chr6 35152852 35153981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1189 1 313 MYB Transcription Factor Family AT5G56110 55.422 3.79e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g1189 Myb_DNA-binding 1.6e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1189 6 35152852 35153981 Lja6g1189 6 35152852 35153981 ECH