Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1182 ATGCAGTCTAAGTCTGAAGCTGCAAATCGATTGAGGTCGGATCCTCATTCCTTTCAACCTGGCAGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGGTACAATCCTATGGCCCAAACAATGTCTGGGGCAAACGCATCCAATTCATCCTCTGAAGGCCCTAATGGTGATTCAGAATCCAATGATGAAGGCCAGTCTTTATCCAATAGTGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCACAGGCTGCTGATCCTAATCAATCAGGAAATCATGGTCAAGAACAGCAAGGGGTGCAGCACGCCACATCGTCTGCTCCGATACCACAACTGGAACTTGTTGGTCATTCAATTGCATGTGCTCCAAATCCCTATCAGGATCCATACTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGGTACGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTACGGCGTAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTAATAAAATCTAGGAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGTAGCGGAGGACGATTTGCAAAGAAAACTGATCTTGATAACAACTCAGGCAAGGAAAAGGATAATGGTTCTGGTCCGGTCCTGTCATCACAGTCAATTAGTAGTTCTGGTTCCGAACCTTTACCTTCTGACGAAACATGGAATTCTCCTCACATGCAACATGATGCAAGAGGATCAAAAGTGGGCGACAGATTTGAAGCAGCCAATTATGAGAATGGTAGTGGCTCCTACCATAACAATAATGGTTCGCAATCTTCAAGGTATCATCAGCCTTCAGGTGAAAGAGTGGACGAAGGGGACTGTTCTGGCCAGCAACGCGGAAGCGTCTCCTCTAATGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG 1014 0.4694 MQSKSEAANRLRSDPHSFQPGSVYSEPWWRGVGYNPMAQTMSGANASNSSSEGPNGDSESNDEGQSLSNSGMNEEDDDATKDSQAADPNQSGNHGQEQQGVQHATSSAPIPQLELVGHSIACAPNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGSGGRFAKKTDLDNNSGKEKDNGSGPVLSSQSISSSGSEPLPSDETWNSPHMQHDARGSKVGDRFEAANYENGSGSYHNNNGSQSSRYHQPSGERVDEGDCSGQQRGSVSSNEASQRRLAIQ* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1182 337 MobiDBLite consensus disorder prediction 318 337 - -
Lja6g1182 337 MobiDBLite consensus disorder prediction 234 268 - -
Lja6g1182 337 MobiDBLite consensus disorder prediction 1 107 - -
Lja6g1182 337 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 35 327 IPR001289 GO:0003700|GO:0006355
Lja6g1182 337 MobiDBLite consensus disorder prediction 219 233 - -
Lja6g1182 337 MobiDBLite consensus disorder prediction 199 218 - -
Lja6g1182 337 MobiDBLite consensus disorder prediction 38 73 - -
Lja6g1182 337 PRINTS CCAAT-binding transcription factor subunit B signature 198 221 IPR001289 GO:0003700|GO:0006355
Lja6g1182 337 PRINTS CCAAT-binding transcription factor subunit B signature 167 189 IPR001289 GO:0003700|GO:0006355
Lja6g1182 337 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 35 327 - -
Lja6g1182 337 ProSitePatterns NF-YA/HAP2 subunit signature. 169 189 IPR018362 GO:0003677|GO:0016602
Lja6g1182 337 Gene3D - 164 226 - -
Lja6g1182 337 MobiDBLite consensus disorder prediction 197 337 - -
Lja6g1182 337 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 166 221 IPR001289 GO:0003700|GO:0006355
Lja6g1182 337 MobiDBLite consensus disorder prediction 84 107 - -
Lja6g1182 337 SMART cbf3 163 224 IPR001289 GO:0003700|GO:0006355
Lja6g1182 337 MobiDBLite consensus disorder prediction 287 305 - -
Lja6g1182 337 ProSiteProfiles NF-YA/HAP2 family profile. 164 224 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1182 Lja-Chr6 34454736 34459813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1182 16 264 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.462 1.77e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lja6g1182 CBFB_NFYA 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1182 K08064 - gmx:100808378 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1182 6 34454736 34459813 Lja6g1182 6 34454736 34459813 ECH
Lja6g1182 6 34454736 34459813 Lja6g1182 6 34454736 34459813 PCT