Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1173 ATGGAAAAGAAGCTCAAGAAGTGCGACTATGATGTAACTTCCTGTTGTTTAGTAAGAGATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATACGACATAGTGATCAGAGATGAAAACATATCTGACATGGATGGGTTGACACTTCTTGAGCATGTTAGACTCGAGATGGATGTTCCTGTCATTATGATGTCTAAGGATGGAGAAACAAGCAGAGTGATGAAATGCGTTCAACTTGGAGTGTGTGATTATCTCATCAAGCCTATACAGATCAAAGAACTGAAAAATATATGGCTGCATGTATTAAGAAAAAGGATACATGAGGCTAGGGAATTTGAAAGTTATGAGAGCATTCACTTGATGAGAAATGGATCAGAACTGTCTGATTATGGTAACCTGATTGCTGATGAAGATATGACCTCAACCAAGAAAAGAAAAAAAGCTAGAGTAGTTTGGTATGAAGATCTTCATCACAAGTTTGTTAAAGCGGTGAATCAGATTGGACTTGATAAAGCTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGACTAGAGAGAAGATTGCTAGCCACTTGCAGAAATACCGGCTTTCCTTGAGTAGGCTTCAGAAAGACGACGAACAGAACTCTTCCTCAAAAGGTAGCCTTACATCGTTTGATTGTGCCATCCCAACACAGTACTCTTGGACTGAAGTTCCAAGAATGCAACTCAAAGAACAGAAGTCAATTGTTCAGTTAGAGGATAGCTTCAACCAGTTGCCACCATTACTTGGAAAGCAGCACCAATCACAATCAATTGCTTCAATTAGTTCCACCCCCTCTATAACTGAGGAAGAGGTTCCTGCTTGTATAGAAACAAATCCTTTGTTTTCTGATTACAATAGCAGTTACACCAGTTCTGTGAGTTCCAAAGTGAGTGCAATTGACAGCTTTCCGATTCAGCCTGGAAGCCTTATGATGAGTGATCAACCTTTACAACCCACATCCGCTGCAAATTTAGGCTTGAAAACACTGGGATCTAATCTCAGTTCCATTTCTCATTTGGAGTCTTACCAAAGAAACCTACTTTTGGGAGCTGATACACCTTCTGCTTCTTCGGAGGAGGACTTATATTCTTACAGGATACAAGGTGAATGCTATGATATGAACTTCTGTCTGCAGAGCATAGAGATGCCTGAGTTTTATGATCCAGGGCTTATTACAGAATTTCCGCCTCACTATGATTCAACTGATTATTCAGTTATGGATCAAGGTCTACTCATAGCATGA 1278 0.4006 MEKKLKKCDYDVTSCCLVRDALNLLRERKDGYDIVIRDENISDMDGLTLLEHVRLEMDVPVIMMSKDGETSRVMKCVQLGVCDYLIKPIQIKELKNIWLHVLRKRIHEAREFESYESIHLMRNGSELSDYGNLIADEDMTSTKKRKKARVVWYEDLHHKFVKAVNQIGLDKAGPKKILDLMNVPWLTREKIASHLQKYRLSLSRLQKDDEQNSSSKGSLTSFDCAIPTQYSWTEVPRMQLKEQKSIVQLEDSFNQLPPLLGKQHQSQSIASISSTPSITEEEVPACIETNPLFSDYNSSYTSSVSSKVSAIDSFPIQPGSLMMSDQPLQPTSAANLGLKTLGSNLSSISHLESYQRNLLLGADTPSASSEEDLYSYRIQGECYDMNFCLQSIEMPEFYDPGLITEFPPHYDSTDYSVMDQGLLIA* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1173 425 Gene3D - 1 119 - -
Lja6g1173 425 PANTHER TWO-COMPONENT RESPONSE REGULATOR 213 402 - -
Lja6g1173 425 Pfam Myb-like DNA-binding domain 149 199 IPR001005 -
Lja6g1173 425 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 212 IPR045279 GO:0009736
Lja6g1173 425 PANTHER TWO-COMPONENT RESPONSE REGULATOR 213 402 IPR045279 GO:0009736
Lja6g1173 425 SUPERFAMILY CheY-like 2 116 IPR011006 -
Lja6g1173 425 SMART REC_2 1 98 IPR001789 GO:0000160
Lja6g1173 425 ProSiteProfiles Response regulatory domain profile. 1 102 IPR001789 GO:0000160
Lja6g1173 425 CDD REC_typeB_ARR-like 1 102 - -
Lja6g1173 425 Pfam Response regulator receiver domain 3 96 IPR001789 GO:0000160
Lja6g1173 425 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 147 200 IPR006447 GO:0003677
Lja6g1173 425 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 212 - -
Lja6g1173 425 Gene3D - 143 206 - -
Lja6g1173 425 SUPERFAMILY Homeodomain-like 145 204 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1173 Lja-Chr6 34224004 34228145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1173 1 205 Response Regulator Gene Family AT2G25180 46.667 3.62e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja6g1173 Response_reg 2.3e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1173 - K14491 lja:Lj0g3v0195339.1 410.994