Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1166 ATGATGTCATACTCAAGAAGATCAAGGTATTCTCTTTCTCCTTCTCCAGACAGGAGATACAGGTCTGTGTCCAGGTCTCTTTCAAGGTCCCAATCCCGAAGCCGTTCAAGGAGTTTTTCTCCCGACGTGGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGAGAATTGGAGAAGCATTTTGCTACTGAAGGAAAAGTGATAGATGTTCATCTGGTAGTCGATCCATGGACAAGGGAATCCCGTGGGTTTGGATTCGTGACAATGGATACTCTTGAAGATGCTAATCGGTGTGTTAAGTACCTGAATCGCTCTGTACTTGAAGGGCGTGTTATCACGGTTGAGAAGGCTAGAAGACGACGTGGTCGAACCCCCACTCCTGGGAGGTACCTAGGGTTGAGGACTGTTCGAGCACGCCGGCGCTCTCCAAGTTACTCTCCTCGCCGCCGCTCTCCAACCTATTCTCCTTACAGAAGAAGCTATAGTCGTTCTCCCTATTCTTCAGACCGCAGCAGGAGTCGATCTCGATCTTACTCCCCTGACTATCGGAGAAGGAGGTCCTACTCTCCATACTACAGCCGGCGAAGGAGGTCTTACTCTCCACACTACAGCAGGCGCCGCCGGTCATATTCCCGGTCTCGCTCTCCTTACGACGGCTCACCTGTCAGCATCCGTGACAGATCATACTCTCCTTATGACTCCAGATATGATTCCCCGGACGATCGCTCCTACAGAAGGCCCCGTCACAGGTCACTCTCTCGAAGTGTGTCGCCCCCGCCAAGGAGAAGGTCAAGGAGGAGCTACTCACGAAGTGTCTCTCCTGTTCGGAGGAGGAGGTACTCACCAAGTGTGTCTCCCAGTCCAAGGAGGAGATCGGGGAGGAGTTATTCAAGAAGCTCTAGAAAGAGTGGTGGTTATTATTCCAAACGCAAGTATTCGCGATCAAGGAGCCCAAGTGTGAGTGCAAGTTCAAGATCAATATCGAGGTCTGATACTCCCGGATCCACTCCTTGA 1035 0.5092 MMSYSRRSRYSLSPSPDRRYRSVSRSLSRSQSRSRSRSFSPDVENPGNNLYVTGLSPRITKRELEKHFATEGKVIDVHLVVDPWTRESRGFGFVTMDTLEDANRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTVRARRRSPSYSPRRRSPTYSPYRRSYSRSPYSSDRSRSRSRSYSPDYRRRRSYSPYYSRRRRSYSPHYSRRRRSYSRSRSPYDGSPVSIRDRSYSPYDSRYDSPDDRSYRRPRHRSLSRSVSPPPRRRSRRSYSRSVSPVRRRRYSPSVSPSPRRRSGRSYSRSSRKSGGYYSKRKYSRSRSPSVSASSRSISRSDTPGSTP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1166 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 119 IPR000504 GO:0003723
Lja6g1166 344 MobiDBLite consensus disorder prediction 124 344 - -
Lja6g1166 344 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 9 262 - -
Lja6g1166 344 SMART rrm1_1 49 122 IPR000504 GO:0003723
Lja6g1166 344 Gene3D - 3 132 IPR012677 -
Lja6g1166 344 MobiDBLite consensus disorder prediction 317 344 - -
Lja6g1166 344 MobiDBLite consensus disorder prediction 237 254 - -
Lja6g1166 344 PANTHER TRANSFORMER-2-RELATED 9 262 - -
Lja6g1166 344 SUPERFAMILY RNA-binding domain, RBD 29 139 IPR035979 GO:0003676
Lja6g1166 344 MobiDBLite consensus disorder prediction 154 180 - -
Lja6g1166 344 CDD RRM_RBMX_like 47 124 - -
Lja6g1166 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Lja6g1166 344 MobiDBLite consensus disorder prediction 1 49 - -
Lja6g1166 344 MobiDBLite consensus disorder prediction 255 280 - -
Lja6g1166 344 MobiDBLite consensus disorder prediction 281 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1166 Lja-Chr6 34045264 34050039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1166 49 161 Eukaryotic Initiation Factors Gene Family AT2G36660 32.174 6.63e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1166 - - gmx:100808038 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1166 6 34045264 34050039 Lja6g1166 6 34045264 34050039 ECH