Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1163 ATGAAGAAAACACCAGGTCCTACTTTGCATCAGTCTAGCCAAAGAAAAAAGAATCATGGTCTACAAAATAGTGGTGCAGTCAATGGCAATGGCACAAATGGACACAATCATAAGAATCATGCTTCCCCATCATATTTCAAATCTGCTTTCAAGATAATTGCAAGTGTTTTTACATTGTTTCTCCCTGGGAAAAGAAAAACAGCCCAAGAAGCTGCTGAAAATCATGATAGGAAGAACACACAAAAAGTCAGAGGAGTGCCATCTTCAACAGAAACATCATATGATAGTTCTAAGAATTCATCAAAATGGAAGTCTTCTCAATCCTCTGGATCATCAAGCACTCCAAATATTCAGCTTGGAAAGGGAAACTTTTCCTTTGACGAAATTTGCAAGGCAACAGCGAAATTCTCTCCAGATAATAAGATTGGGGAAGGTGCGTTTGGAACGGTATACAGAGGGAAGCTTAATGATGGAACCCTTGTGGCTGTGAAGCGTGCCAAGAAGGATGTACAAAACAAGAATTTAGCTGAGTTCAAGAATGAAATAAGCACCTTGTCAAAAATTGAGCATCTGAATCTTGTGAGGTGGCATGGATATTTGGAACATGGAGATGAAAAGATCATTGTTATTGAGTATGTTAATAATGGAACTCTCAGGGATCATCTGGATGGAACACGGGGAAATGGACTAGAAATTGGCGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATTACATACCTTCACATGTATACAGATCATCCAATTATTCATAGAGACATCAAAGCAACAAATATCTTAATAACTGACAATCTAAGGGCCAAAGTGGCTGACTTTGGCTTTGCGCGGTTGGCTGCAGAGGACCCAGCTAAAACTCATATTTCAACTCAAATTAAAGGAACAGCTGGGTACTTGGATCCTGATTACATGAGAACACAACAACTCTCTGAAAAAAGTGATGTTTACTCCTTTGGGGTGTTGCTTGTTGAAATGATGACAGGAAGACATCCAGTTGAACCAAAGAGACCCCTTAGTGAAAGAGTTACAATTAAGTGGGCAATGCAGATGTTGAAACAACGAGAAGCTGTGATTGCCATGGATCCAAGGCTTCGGAGAGGTCCGACCTCAAACAAGGCTGTACATAAGGTTTTGAAGCTTGCTTTCCAATGCCTGGCACCAGTGAGACGAGCACGGCCATCCATGAAGAGTTGCGCAGAGATTCTATGGGGCATCCGCAAAGATTTTAGAGATAAAGCTGTTTCTCATTCTCCCTATGGAGCTCCCCATTCTGCAGATTTTGCTCAGATAGATTCTAGGAATAATAGGCATGTGTCACATGGTACTAAAGATAACAAACAGTATAAATTTGTCTCTGCATAA 1383 0.4064 MKKTPGPTLHQSSQRKKNHGLQNSGAVNGNGTNGHNHKNHASPSYFKSAFKIIASVFTLFLPGKRKTAQEAAENHDRKNTQKVRGVPSSTETSYDSSKNSSKWKSSQSSGSSSTPNIQLGKGNFSFDEICKATAKFSPDNKIGEGAFGTVYRGKLNDGTLVAVKRAKKDVQNKNLAEFKNEISTLSKIEHLNLVRWHGYLEHGDEKIIVIEYVNNGTLRDHLDGTRGNGLEIGERLDIAIDVAHAITYLHMYTDHPIIHRDIKATNILITDNLRAKVADFGFARLAAEDPAKTHISTQIKGTAGYLDPDYMRTQQLSEKSDVYSFGVLLVEMMTGRHPVEPKRPLSERVTIKWAMQMLKQREAVIAMDPRLRRGPTSNKAVHKVLKLAFQCLAPVRRARPSMKSCAEILWGIRKDFRDKAVSHSPYGAPHSADFAQIDSRNNRHVSHGTKDNKQYKFVSA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1163 460 MobiDBLite consensus disorder prediction 1 42 - -
Lja6g1163 460 MobiDBLite consensus disorder prediction 68 117 - -
Lja6g1163 460 PANTHER OS01G0253100 PROTEIN 1 450 IPR045271 GO:0004714|GO:0006468
Lja6g1163 460 Gene3D Transferase(Phosphotransferase) domain 1 213 426 - -
Lja6g1163 460 SUPERFAMILY Protein kinase-like (PK-like) 110 412 IPR011009 -
Lja6g1163 460 MobiDBLite consensus disorder prediction 68 82 - -
Lja6g1163 460 Gene3D Phosphorylase Kinase; domain 1 95 212 - -
Lja6g1163 460 ProSiteProfiles Protein kinase domain profile. 136 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1163 460 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Lja6g1163 460 Pfam Protein tyrosine and serine/threonine kinase 139 409 IPR001245 GO:0004672|GO:0006468
Lja6g1163 460 PANTHER OS02G0821400 PROTEIN 1 450 - -
Lja6g1163 460 MobiDBLite consensus disorder prediction 83 117 - -
Lja6g1163 460 SMART serkin_6 136 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1163 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1163 Lja-Chr6 34031851 34034743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1163 124 413 Receptor kinase-like Gene Family AT1G30570 43.793 6.52e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Lja6g1163 PK_Tyr_Ser-Thr 9.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1163 - - gmx:100819818 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1163 6 34031851 34034743 Lja6g1163 6 34031851 34034743 ECH