Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1159 ATGTCAGGAAATTCACCAAACACGACGAAGAGGAAACTTCCCTCTAATCATCACGATGAAAAGAATAAGAAAACACACGTTCAGGTGAAGGCAGAAAAAATGGACAACAGTGACATGAATTCGAATTGCTTATGCGGTATTTGCTTTGATCACAAAAAGGAAACTGAAATGTTCAGAGGAAGCAAGTGCAACCACCCCTTTTGCGCTGATTGCATATCCAAGCATGTCGCTGCTCAGATTCAACAAAATGCTCTCAAGGTGAATTGTCCAAAGCCTAATTGCGGTGTCGAATTGGAGCCGGAGTATTTGAACCCGATTTTGCCTGAAGAAGTCATTGTTCGATTGGAATCCGCGAGGTGCGAGTCTTTGATCGCGGGGTTGCGGAAGACTTATTGCCCATTTAAGGATTGTTCTGTTTTGTTGGTGGATGATGGGGGTGAAGTTGTGACTGCTGCTGAGTGCCCCTCTTGCCATAGGTTGTTTTGTGCTCAGTGTTTGGTTCCGTGGCACGCGGGGTTGAATTGTAAGGAGTACTTGGCGCCTGCTGATAGGAAAGTTGAGAAGGATTTAGATAGGAAGTTTCTTGATTTGGCTAAAAATAGCATGTGGCAGAGATGCCCCAAATGCAACTTCTATGTCCAAAGAAGTAGTGGATGTGTGGATGCAACTTCTGCTACCACTGTGGGAAGGATTGGGTGCATGGACATATATGTGATCAACCTTAGTCCATATCAGATTTCACAGGTAGCTTCAGAACTCCTAGCTACCATACAGAATTAG 780 0.4449 MSGNSPNTTKRKLPSNHHDEKNKKTHVQVKAEKMDNSDMNSNCLCGICFDHKKETEMFRGSKCNHPFCADCISKHVAAQIQQNALKVNCPKPNCGVELEPEYLNPILPEEVIVRLESARCESLIAGLRKTYCPFKDCSVLLVDDGGEVVTAAECPSCHRLFCAQCLVPWHAGLNCKEYLAPADRKVEKDLDRKFLDLAKNSMWQRCPKCNFYVQRSSGCVDATSATTVGRIGCMDIYVINLSPYQISQVASELLATIQN* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1159 259 SMART ibrneu5 113 175 IPR002867 -
Lja6g1159 259 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 222 IPR031127 GO:0004842|GO:0016567
Lja6g1159 259 SUPERFAMILY RING/U-box 41 122 - -
Lja6g1159 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 126 IPR013083 -
Lja6g1159 259 MobiDBLite consensus disorder prediction 12 26 - -
Lja6g1159 259 SUPERFAMILY RING/U-box 127 179 - -
Lja6g1159 259 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Lja6g1159 259 MobiDBLite consensus disorder prediction 1 26 - -
Lja6g1159 259 Pfam IBR domain, a half RING-finger domain 128 175 IPR002867 -
Lja6g1159 259 ProSiteProfiles Zinc finger RING-type profile. 45 90 IPR001841 -
Lja6g1159 259 ProSiteProfiles TRIAD supradomain profile. 41 257 IPR044066 -
Lja6g1159 259 SMART ring_2 132 209 IPR001841 -
Lja6g1159 259 SMART ring_2 45 92 IPR001841 -
Lja6g1159 259 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1159 Lja-Chr6 33937996 33938920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1159 45 223 C3H Transcription Factor Family AT2G19610 26.702 8.56e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1159 K11975 - gmx:102663173 252.677