LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g1151	ATGATAGTCACTTCAAACACCGTAAACCCTCCAAAACACACAACACCAAGACCTCCTCATCTTCGGAGAAACCAAACCGTCGCCGGCAACAACCGCCACCAAATTGCCCTCCGCGAACGTCTTCAGAAGAAGAATGCAATTGAAATGACTGGACCCGCGAAAAAGATGACGAAGAGAAAATCTCGTTCCAACGATCGTGATGAAAACAAGAAGAAGAAAACAGGCACTGTGATAGAGACGGAAGAAGAAGCTTCTGGCGTCGTCGTGAAGCCAGAGAAACAGAACGGAGGCAAGAACAGACACGTGATCAAGGCGGAAGAAAACAACAGCAACGGCGTCGTAAATTTCAACAACCGTTGCTTATGCGGTATATGCTTCGATTACAAGAAAGATTCTGAAATGTTCAGAGGGAGCAAGTGCGAACACCCCTTTTGCTCTGATTGCATTTCTAAGCATGTCGCTGCTCAAATTCAGCAAAATAATCTCAAGGTGAATTGTCCAAACCCTAATTGCGACGTCGAATTGGGGCCGGAACATTTGAACCTGATTTTGCCTAAAGAAGTTGTTTTTAGATGGGAATCATTGAGGTGTGAGTCTTTGATTGCTGGGTTGCAAAAGAGTTATTGCCCCTTTAAGAATTGCTCAGTTTTGATGGTGGATGATGGGGGTGAAATTGTGACCAATGCTGAGTGCCCTTCTTGCCACAGGCTGTTCTGTGCACAATGTATGGTTCCTTGGCATGCAGGGATGAATTGTGAGGAATTTCAGAAGTCTGGAAGGGTAAAAGGTGAAGAAGATTTAGAGAAGAAGTTTCTGAAGTTGGCTAAAAGAAAAAAGTGGCAGAGGTGTCCCAAATGCAGCTTCTATGTCCAAAGAAGAAGTGGATGTGAACACATGAAATGCAGGTGTGGATGCAACTTCTGTTACGAATGTGGCAAGGATTGGAAGCATGGACATATATGTGATAAACATAATTCCACATAA	984	0.44	MIVTSNTVNPPKHTTPRPPHLRRNQTVAGNNRHQIALRERLQKKNAIEMTGPAKKMTKRKSRSNDRDENKKKKTGTVIETEEEASGVVVKPEKQNGGKNRHVIKAEENNSNGVVNFNNRCLCGICFDYKKDSEMFRGSKCEHPFCSDCISKHVAAQIQQNNLKVNCPNPNCDVELGPEHLNLILPKEVVFRWESLRCESLIAGLQKSYCPFKNCSVLMVDDGGEIVTNAECPSCHRLFCAQCMVPWHAGMNCEEFQKSGRVKGEEDLEKKFLKLAKRKKWQRCPKCSFYVQRRSGCEHMKCRCGCNFCYECGKDWKHGHICDKHNST*	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g1151	327	MobiDBLite	consensus disorder prediction	53	77	-	-
	Lja6g1151	327	SUPERFAMILY	RING/U-box	118	200	-	-
	Lja6g1151	327	Pfam	Zinc finger, C3HC4 type (RING finger)	122	167	IPR018957	GO:0046872
	Lja6g1151	327	MobiDBLite	consensus disorder prediction	41	77	-	-
	Lja6g1151	327	ProSitePatterns	Zinc finger RING-type signature.	140	149	IPR017907	-
	Lja6g1151	327	SUPERFAMILY	RING/U-box	271	325	-	-
	Lja6g1151	327	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	39	323	-	-
	Lja6g1151	327	Pfam	IBR domain, a half RING-finger domain	194	252	IPR002867	-
	Lja6g1151	327	Pfam	IBR domain, a half RING-finger domain	274	320	IPR002867	-
	Lja6g1151	327	SUPERFAMILY	RING/U-box	203	258	-	-
	Lja6g1151	327	SMART	ibrneu5	190	252	IPR002867	-
	Lja6g1151	327	SMART	ibrneu5	265	321	IPR002867	-
	Lja6g1151	327	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	117	203	IPR013083	-
	Lja6g1151	327	ProSiteProfiles	TRIAD supradomain profile.	118	327	IPR044066	-
	Lja6g1151	327	ProSiteProfiles	Zinc finger RING-type profile.	122	167	IPR001841	-
	Lja6g1151	327	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	39	323	IPR031127	GO:0004842\|GO:0016567
	Lja6g1151	327	Gene3D	-	249	327	-	-
	Lja6g1151	327	MobiDBLite	consensus disorder prediction	1	29	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g1151	Lja-Chr6	33489060	33491636	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g1151	122	312	C3H Transcription Factor Family	AT2G19610	31.527	7.86e-23	96.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g1151	K11975		-	lang:109340029	299.671