Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1144 ATGAAGTGGGAAATGGAAATCCTTCCTCCAGCACCATATATTCACAACCCCAACAATAGCACCAATTGGCTTCTAGAAGATAATAGGAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAAAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGTACAGGGTGGCTGAGATGATACCAGGAAAAACAGTTGTGGATGTGATAAAGCAGTACAAGGAATTGGAAGTGGATGTTTGTAACATAGAAGCTGGGTTGGTCCCAATTCCTGGCTACAGCAGCACTACCTCACCCTTCACCTTAGACTGGGTGAACACCCCTCCTGGGTATGATGGGTTTAAAGGACTCACTGCAAAGAGATCCTCTTCAGGCAGATTACCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACACAAGTTGTTTCTGCTGGGTCTGAAAAAGTATGGCAAAGGAGATTGGAGGAACATTTCAAGGAATTTTGTGATTACTAGAACACCAACTCAGGTGGCTAGCCATGCTCAGAAGTACTTCATCAGGCAACTTTCAGGGGGAAAAGACAAGAGGAGAGCTAGCATCCATGACATAACAACAGTTAATCTCACAGAAACCACCAGAACAACTCCTAATTCAGAAGACAGCAAGAGATCCACTTCACCACAGAATTCTGCGATGCTCTCCGGCCTCCGCGGCCCGGATTCGGCATCTGCTGGACTGCATTTTCAGTGGAACAATACTCAGCCAAATGCAGTACCAACTATAGCACCCAATCCTGTACATGAACAACAATTCATGTCTCCTTATGGACTTAACTCCTATGGTTTTAAAATGCCAGGCCAGAATTATTACTTAGGACCTCAGACCCAGAACATGGTTTTCCAAATGCAATCCTCTTCTCAGCACTATTAA 927 0.4531 MKWEMEILPPAPYIHNPNNSTNWLLEDNRNTKWTPAENKLFENALAVYDKDTPDRWYRVAEMIPGKTVVDVIKQYKELEVDVCNIEAGLVPIPGYSSTTSPFTLDWVNTPPGYDGFKGLTAKRSSSGRLPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTTPNSEDSKRSTSPQNSAMLSGLRGPDSASAGLHFQWNNTQPNAVPTIAPNPVHEQQFMSPYGLNSYGFKMPGQNYYLGPQTQNMVFQMQSSSQHY* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1144 308 SUPERFAMILY Homeodomain-like 31 85 IPR009057 -
Lja6g1144 308 MobiDBLite consensus disorder prediction 207 239 - -
Lja6g1144 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 188 IPR017930 -
Lja6g1144 308 Gene3D - 138 188 - -
Lja6g1144 308 CDD SANT 32 78 IPR001005 -
Lja6g1144 308 Pfam Myb-like DNA-binding domain 32 76 IPR001005 -
Lja6g1144 308 Pfam Myb-like DNA-binding domain 139 184 IPR001005 -
Lja6g1144 308 Gene3D - 26 92 - -
Lja6g1144 308 SMART sant 29 81 IPR001005 -
Lja6g1144 308 SMART sant 136 186 IPR001005 -
Lja6g1144 308 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 135 187 IPR006447 GO:0003677
Lja6g1144 308 CDD SANT 139 184 IPR001005 -
Lja6g1144 308 ProSiteProfiles SANT domain profile. 140 188 IPR017884 -
Lja6g1144 308 MobiDBLite consensus disorder prediction 207 235 - -
Lja6g1144 308 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 290 - -
Lja6g1144 308 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 290 IPR043363 -
Lja6g1144 308 SUPERFAMILY Homeodomain-like 134 187 IPR009057 -
Lja6g1144 308 ProSiteProfiles Myb-like domain profile. 132 184 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1144 Lja-Chr6 33177948 33180494 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g1144 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1144 - - gmx:100784163 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1144 6 33177948 33180494 Lja6g1144 6 33177948 33180494 ECH
Lja1g3418 1 42623991 42626997 Lja6g1144 6 33177948 33180494 ECH