Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1135 ATGGCAAACATTGCCACCATCTTCAACAAGTTCCTCTATCTCCCCATCCTCCTCATCCACCTTGGCTGCTTCATTTTCACCACCACCACCGCCTCCGCTGCCGGGAAACAAGACAACCGCCAGACTCAACCTTCAAAGAAACGAAGAGTCTCACCTTTATCCCAACCCTCTTCCCCTTCCCACCCCAAATTCAAAACCCAAAAGGCCCTTTCTTCTTCTTGGCATTTCATCAAACACCTCTTCTCCACAAAATCCTCCTGCAAAACCGCCACCGCCCATTCATCACCGCAATCAACATCAACCACCGCAAGATCATCCCAGCAGTCCCTCATCTCCCTCGCGCAACCCGACCCGTTGCTCCAGGATCCTCCACGCAGGAGGCAATCCGGGTCGTGCCCCGAATCCGACATCTCCGCCGATAACAACAGCCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAGCCCAACCTCCTTGAGCAGCACCAAGCCGCCACCCACGCCGTGTCGGAGCTCGTGGGATCCGACCCGGGTCACAACATCGTCCAGATCATATTCAAATCGGGCTGGCCCGAGACCCGTGTCTCCCCGCGGGTGCTCCGCGTCCTGAAGATCCACAACAGCCCCAAGATCCTCTCCAGATTCGAGGAGTATCGCGAGACCGTGAAAACCAAGGCGGCGGCGCGTCACGGTGGCGCGTCTCGGCGGCGCGATGAACGCTGCATCGCCGACGGCAACGAGCTCATGCGTTTCCACTGCTCCACGTTCCTATGCGAGTTGGGACTGAACGGGGATTCCTCCATTTGTTCGCAGCAATTTTGTAATATTTGCGGGATTATAAAATCAGGGTTCTCACCCAAGCTGGACGGGATTTCCACGCTTTCAACCAGCTGGAGGGCACACGTGTCGATCCCCGAGGACATCGAGGCTGAGTTCCGCTTCATGAACGTGAAGCGGGCCATGCTCGTTTGTCGAGTGGTCGCGGGTCGGGTTGGTTCGGATTCTGATGAGGCTGAGAAAGCGGACGGGGGTTTTGATTCGGTGATGTCGCGAGGGGAGAGTGGAGTTTACACCCGGCTTGATGAGGAGGAGTTGGTGGTTTTTAATCCTAGGGCCGTGCTTCCTTGCTTTGTGATTGTGTATAGTGTGTGA 1179 0.5649 MANIATIFNKFLYLPILLIHLGCFIFTTTTASAAGKQDNRQTQPSKKRRVSPLSQPSSPSHPKFKTQKALSSSWHFIKHLFSTKSSCKTATAHSSPQSTSTTARSSQQSLISLAQPDPLLQDPPRRRQSGSCPESDISADNNSLFFPLRNDIFPCTACGEIFQKPNLLEQHQAATHAVSELVGSDPGHNIVQIIFKSGWPETRVSPRVLRVLKIHNSPKILSRFEEYRETVKTKAAARHGGASRRRDERCIADGNELMRFHCSTFLCELGLNGDSSICSQQFCNICGIIKSGFSPKLDGISTLSTSWRAHVSIPEDIEAEFRFMNVKRAMLVCRVVAGRVGSDSDEAEKADGGFDSVMSRGESGVYTRLDEEELVVFNPRAVLPCFVIVYSV* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1135 392 MobiDBLite consensus disorder prediction 89 108 - -
Lja6g1135 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 181 IPR013087 -
Lja6g1135 392 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 391 - -
Lja6g1135 392 MobiDBLite consensus disorder prediction 34 65 - -
Lja6g1135 392 ProSitePatterns Zinc finger C2H2 type domain signature. 155 176 IPR013087 -
Lja6g1135 392 SUPERFAMILY ADP-ribosylation 178 391 - -
Lja6g1135 392 Gene3D - 179 391 - -
Lja6g1135 392 MobiDBLite consensus disorder prediction 114 138 - -
Lja6g1135 392 PANTHER NUCLEIC ACID BINDING PROTEIN 3 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1135 Lja-Chr6 32312425 32314582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1135 74 392 C2H2 Transcription Factor Family AT2G29660 56.269 1.32e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja6g1135 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1135 - - gmx:100785244 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1135 6 32312425 32314582 Lja6g1135 6 32312425 32314582 ECH