Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1132 ATGCATCGTTCAGGTCCTCCTTTGACCGCCATAGACAGGTTCTTGTGGGGCCAAAACAGCCACTTCACTCCAAAGCAACAATCACAGAACATTGCAAACAACAACCATACTGCAATTGCTAATTTGGATGATGAGTTTTCAACCTATAGATTTATGTGGCCTTACCCTCAAGAAGTAAGTTTTATTGATAAGCTATTGGTAAATGAAGAGGCCATGAATTGGACACAGCAAATCCCCACATTGAAAGAAAATGTGCAAGTTTTGGGGAAGAATTCCAAAGGTGTGGGAAGAAGGCCTAAGAAAGGGTCTTCTGTGGCTTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAACTGCTGAAGTTGGTGAAGCAACATGGTGTAAGAAAATGGTCTCAAATTGCTGAGAAGTTGGAGGGAAGGGCTGGGAAGCAGTGTCGAGAGAGATGGCATAATCATCTGCGGCCTGACATAAAGAAAGATGGTTGGAGTGAAGAAGAAGAGAAGATACTAGTAGAAACCCATGCCAAGCTTGGAAACCGTTGGGCAGACATTGCAAAGAGCATTCCAGGAAGGACAGAGAACGCCATAAAAAACCACTGGAACGCCACAAAAAGGAGGCTGAATTCAAGGAGAAAGAACAAAAGGACCGCCGCAAACTCCAATGGAAAGCCACACTCCACTATTCTTCAAGACTACATCAGAACCAAGATCACTCAAACTAACACCACTCCCCCTGAGCTGGAGCCTTCAACATCTGATCAAACACAGCACTTTGTGTTATCTCAGCATGAAAATTCCTCATCATCATCCCTAATAGCTGCTGAATCATATGATGATGAGATACTTTTTATGCAACAACTTTTCAAGGATAATCAGGTTCAGCAACAACCACTTGTGAATGTTGTTGAGTCTGTTAATTACCACTCCACTAATAACTTTGATCAGATGCTCACTGATGATGCCACTGACTTTGGGTATGCCCAATATTTCAACCCTAAGCCAAACTCACGTAACATGTACGTGAATGAGAGTGTCATGGTCCCTAGAAATTATATGGCTCCAACTTCCATCAACTACCTTGATTCTGATCCCTATCTATCTCACTTGCTAAATGGAACTGCTGCCAGCTCAACACTTTGCTGTAATTATGGGATTCAAAACCAGAACCTGGACTTGCAGCTGGGGGGTCAAGACTTTTCAGAGTCAAAGAGAGAGATGGATTTGATGGAGTTGGTTTGTTCTGCTCAGTTTTTGCACTAG 1266 0.4297 MHRSGPPLTAIDRFLWGQNSHFTPKQQSQNIANNNHTAIANLDDEFSTYRFMWPYPQEVSFIDKLLVNEEAMNWTQQIPTLKENVQVLGKNSKGVGRRPKKGSSVALIKGQWTDEEDRKLLKLVKQHGVRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEEKILVETHAKLGNRWADIAKSIPGRTENAIKNHWNATKRRLNSRRKNKRTAANSNGKPHSTILQDYIRTKITQTNTTPPELEPSTSDQTQHFVLSQHENSSSSSLIAAESYDDEILFMQQLFKDNQVQQQPLVNVVESVNYHSTNNFDQMLTDDATDFGYAQYFNPKPNSRNMYVNESVMVPRNYMAPTSINYLDSDPYLSHLLNGTAASSTLCCNYGIQNQNLDLQLGGQDFSESKREMDLMELVCSAQFLH* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1132 421 CDD SANT 164 206 IPR001005 -
Lja6g1132 421 CDD SANT 112 155 IPR001005 -
Lja6g1132 421 PANTHER MYB PROTEIN-RELATED 33 389 - -
Lja6g1132 421 MobiDBLite consensus disorder prediction 243 267 - -
Lja6g1132 421 Gene3D - 163 230 - -
Lja6g1132 421 MobiDBLite consensus disorder prediction 208 230 - -
Lja6g1132 421 ProSiteProfiles Myb-like domain profile. 156 206 IPR001005 -
Lja6g1132 421 SUPERFAMILY Homeodomain-like 107 202 IPR009057 -
Lja6g1132 421 PANTHER MYB TRANSCRIPTION FACTOR 33 389 - -
Lja6g1132 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 159 IPR017930 -
Lja6g1132 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 210 IPR017930 -
Lja6g1132 421 Gene3D - 108 160 - -
Lja6g1132 421 Pfam Myb-like DNA-binding domain 112 170 - -
Lja6g1132 421 ProSiteProfiles Myb-like domain profile. 109 155 IPR001005 -
Lja6g1132 421 SMART sant 160 208 IPR001005 -
Lja6g1132 421 SMART sant 108 157 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1132 Lja-Chr6 32273680 32275819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1132 1 417 MYB Transcription Factor Family AT5G58850 38.444 4.94e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g1132 Myb_DNA-bind_6 1.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1132 K09422 - gmx:100786295 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1132 6 32273680 32275819 Lja6g1132 6 32273680 32275819 ECH