Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1130 ATGCCTTCTCTCACCACCAAGCGCAGACTCAGATCTGCCGCACCGCCGCCGTCTCCGCCCAAGCGTCACCGCCGATGCACGCCGTGTTCCGCCGCACCGTCACTAATCCAAGATGTAACCGCTGCTACGAAACCCAAGTGGAATCCTAAAGATTGTGAGCAGTTGAAGATGGTGAAGGAGGCACTGCACGTGTCCACCGCGCCGGAGACAATCGTTTGCCGTGAGGAGGAGCAGAATGTGGTTTTGGAGTTCTGTAAAGGATGCGTTGATCACCAGAAGGCTGGGAGTCTTTACATATGTGGTTGTCCTGGAACTGGCAAATCTTTATCTATGGAAAAAATCAAGGGACTTTTGCTTCAATGGGTCTCCCAGGCTGATTTCCCGACACTGGATGTTTTATCTGTGAATTGCACATCTCTTGTCAACACAACTGATATTTTCACCAAGATACTTGGGTTAAGCAAAGCACCGGGGAAAAAGGTTTCTGGCACACCCTTACAGCAACTTCAGCACATGTATTCTCAGAAATCATCCAGCAAGAATATGACATTGATAATAGCTGATGAGTTAGACTATCTTATAACTAAAGACAGAGCTGTGCTTCATGATCTTTTCATGCTTACAACATTCCCGTTTTCCAGATGTATATTAGTAGGTGTTGCAAACGCAATTGATCTAGCTGATCGATTCCTACCAAGGCTTACAGCATTAAATTGCAAGCCTGAAGTTATAACTTTCCGGGCGTACTCTAAAGATCAGATCCTTAGGATTCTTGAAGAAAGGCTAAAGGAACTTCCTTACACTGTCTTCCAACACCAAGCGCTGGAATTATGTGCTAGGAAAGTTGCAGCTGCTTCTGGAGATATGCGAAATGCTCTTTGTATATGCAGGAGTGCAATAGAGATTCTAGAAGGGGAAATTAGAGAATCTGCCTCCAATTTGGATACCTCGTTGGAAGAGAAATCATCCACTGAACAGAATCTTGCGACAGATCCTGATTTTGTTAAAAAACAAGAATTTGACATAGTAAGGATTGATCACATGGCTCGTGCTTTGTCTAAAACATATAGATCACCGGCAGTGGATACAATACAATCTCTGCCACATCATCAACAGATTATACTCTGCTCTACTATGAAACAATTCCGTGGTGCCAAGAAAGATGCAATTCTTGGGGAGTTGTATAAATCTTACATGGAGATATGTAAATCATCACTAATTCCACCAGCAGGAATCTTAGAATTTTCAAACATGTGCAGAGTGCTGAATGATCAGGGGCTTATTAAACTAGGACAATCCCGGGAGGATAAATTGAGAAGAGTATCACCTAAAGTAGATGAGGGTGATATTACTTTTGCGTTGCAGGGAATCCGATTTTTTCGGAACTGTCTTCAAGACTGGTGA 1404 0.4345 MPSLTTKRRLRSAAPPPSPPKRHRRCTPCSAAPSLIQDVTAATKPKWNPKDCEQLKMVKEALHVSTAPETIVCREEEQNVVLEFCKGCVDHQKAGSLYICGCPGTGKSLSMEKIKGLLLQWVSQADFPTLDVLSVNCTSLVNTTDIFTKILGLSKAPGKKVSGTPLQQLQHMYSQKSSSKNMTLIIADELDYLITKDRAVLHDLFMLTTFPFSRCILVGVANAIDLADRFLPRLTALNCKPEVITFRAYSKDQILRILEERLKELPYTVFQHQALELCARKVAAASGDMRNALCICRSAIEILEGEIRESASNLDTSLEEKSSTEQNLATDPDFVKKQEFDIVRIDHMARALSKTYRSPAVDTIQSLPHHQQIILCSTMKQFRGAKKDAILGELYKSYMEICKSSLIPPAGILEFSNMCRVLNDQGLIKLGQSREDKLRRVSPKVDEGDITFALQGIRFFRNCLQDW* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1130 467 PIRSF Cdc6 3 467 IPR016314 GO:0006270|GO:0051301
Lja6g1130 467 SUPERFAMILY "Winged helix" DNA-binding domain 361 463 IPR036390 -
Lja6g1130 467 Gene3D - 244 331 - -
Lja6g1130 467 CDD Cdc6_C 368 450 IPR015163 -
Lja6g1130 467 SMART Cdc6_C_2 375 454 IPR015163 -
Lja6g1130 467 CDD AAA 77 238 - -
Lja6g1130 467 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 20 464 - -
Lja6g1130 467 Pfam AAA domain 92 209 IPR003593 -
Lja6g1130 467 Gene3D - 360 447 IPR036388 -
Lja6g1130 467 MobiDBLite consensus disorder prediction 1 26 - -
Lja6g1130 467 Pfam AAA lid domain 271 304 IPR041083 -
Lja6g1130 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 309 IPR027417 -
Lja6g1130 467 Gene3D - 51 243 IPR027417 -
Lja6g1130 467 Pfam CDC6, C terminal winged helix domain 375 453 IPR015163 -
Lja6g1130 467 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 20 464 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1130 43 464 Core DNA Replication Machinery Family AT2G29680 64.554 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1130 K02213 - gmx:100791200 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1130 6 31893214 31898639 Lja6g1130 6 31893214 31898639 ECH